Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04022 ATGTTCAAATTCCTTAAAGAAGTTGTTGGTGGATCTGGAACTGGTATCAAAGATCTTCCATATATCATCGGTGAACCTTATCCTTCTGCTTGGGGCTCTTGGCTTAATCATCGCGGTACATCCAAGGATGATGGTTCACCGGTTTCAATTTTTTCATTATCTGGAAGCAATGCACAGGATGGACATTTAGCTGCCGGTCGTAATGGTGTCAAGCGCCTACGAACTGTTAGGCATCCAAATATTTTGTCGTTTCTTCATAGTACTGAGATCGAAACTTTTGATGGCGGTTCTTCTAAGGTTACAATTTATATTGTGACTGAACCTGTAATGCCACTGTCAGATAAGATTAAGGAGTTAGGTCTTGATGGTACACAAAGGGATGAATATTATGCTTGGGGACTGAATCAGATAGCGAAAGCCGTGAGCTTCTTAAATAATGATTGTAAACTTGTTCATGGCAATGTTTGCTTGGCTAGTGTTGTTGTGACGCAAACTTTGGACTGGAAACTCCATGCTTTTGATGTTCTATCAGAGTTTGATGGGAGTAATGAGACATCCTCTACACAAATGCTGCAATATGCATGGCTTGTTGCAACACAGTACAAATCAATGGAGCTGGCAAAATCCGACTGGGCTGTAATTAAGAAGTCTCCTCCATGGGCCATTGATTCTTGGGGCATGGGCTGTCTAATCTACGAGCTATTCTCTGGTTTAAAGTTGAGCAAAACAGAGGAGTTACGCAACACTGGCTCCATTCCCAAGTCTCTGCTTCCAGATTACCAGCGGCTACTCAGTTCCACACCTTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGTGAGTATTTTCAAAATAAGTTGGTAGACACAATACATTTCATGGAAATTCTTAGTTTGAAAGATAGTGTTGAGAAGGACACTTTCTTCCGCAAGCTTCCAAATTTAGCAGAGCAGCTTCCTCGTCAGATTGTGTTAAAGAAGTTACTTCCTTTATTAGCTTCTGCCCTTGAATTTGGTTCAGCTGCTGCCCCTGCTTTGACTGCATTGTTGAAAATGGGTTCCTGGCTTTCAGCTGAGGAGTTCCGTGTAAAGGTTCTTCCAACAATAATTAAACTCTTTGCCTCCAATGATCGAGCTGTCCGTGTCAGCCTTCTCCAACATATTGATCAATACGGAGAGTCATTATCAGCTCAAGCTGTTGATGAACAGGTTTACCCTCATGTTGCTACTGGTTTCTCTGATACATCTGCTTTTTTGAGGGAGCTTACTCTCAAGTCCATGTTAGTTCTGGCTCCGAAGCTGTCTCAAAGGACCTTGTCTGGATCATTATTAAAGCATCTATCAAAGTTACAGGTCGATGAAGAGCCAGCAATACGAACAAATACAACTATCCTGCTAGGAAATATTGCAAGCTACTTAAACGAAGGGACAAGAAAAAGAGTGTTGATTAATGCATTTACAGTCCGTGCTTTACGTGATACCTTTCCACCTGCAAGAGGAGCAGGCATTATGGCTTTATGTGCCACCAGTTCCAACTATGACATCACTGAAATTGCCACTCGGATTCTTCCTAATGTTGTTGTACTCACAATTGATCCTGACAGTGATGTTCGATCCAAGGCATTTCAAGCTATTGATCAATTTTTGCAGATGGCAAAGCAACATTATGAAAAGACAAACATAGAGACTACTGGAGGTGCAGGAATGGAAAGTTCATCAATTCCAGGAAATGCAGGTTTACTTGGATGGGCAATGAGCTCCTTGACTCTGAAGGGCAAACCTTCTGATCATGCTCCAGTTGCTTCTGTGAGTTCTAGTGCCCTTACACCAACATCTTCTAATGCCAGCTCAGTTGTAGATACTCCTTCAACAGCACCTATCCGTGTAAATTCCACACCCGATTTCACTGAGCACCATGCCCCTACATCTCCTACATCAACGGATGGCTGGGGAGAGCTGGAGAATGGAATCGATGAGGAACCTGAAAATGACAAGGATGGGTGGGATGATATAGAACCACTTGAAGAAACAAAGCCAACTCCAGCTCTTGCTAACATTCAAGCAGCTCAAAGGCGGCCAGTTTCTCAACCTGCTTCGCATGTAAAAGCTCCAATTTTGCGACCCAAAAGTGCATCAAAGTTGAGCAAGGACGAAGATGATGATTTGTGGGGTGCCATAGCAGCTCCTGCTCCAAAAACATCAAAACCTTTAAATTTGAAATCGACAGCAACTGATGATGATGATCCCTGGGCTGCCATTGCAGCTCCCGCACCCACTACAAGGGCCAAGCCCTTGTCAGCTGGCAGAGGTCGGGGAGCCAAACCCGCCGTGCCAAAATTAGGTGCTCAGCGGATAAGCCGGACATCATCCGGGACATAA 2382 0.4353 MFKFLKEVVGGSGTGIKDLPYIIGEPYPSAWGSWLNHRGTSKDDGSPVSIFSLSGSNAQDGHLAAGRNGVKRLRTVRHPNILSFLHSTEIETFDGGSSKVTIYIVTEPVMPLSDKIKELGLDGTQRDEYYAWGLNQIAKAVSFLNNDCKLVHGNVCLASVVVTQTLDWKLHAFDVLSEFDGSNETSSTQMLQYAWLVATQYKSMELAKSDWAVIKKSPPWAIDSWGMGCLIYELFSGLKLSKTEELRNTGSIPKSLLPDYQRLLSSTPSRRLNTSKLIENSEYFQNKLVDTIHFMEILSLKDSVEKDTFFRKLPNLAEQLPRQIVLKKLLPLLASALEFGSAAAPALTALLKMGSWLSAEEFRVKVLPTIIKLFASNDRAVRVSLLQHIDQYGESLSAQAVDEQVYPHVATGFSDTSAFLRELTLKSMLVLAPKLSQRTLSGSLLKHLSKLQVDEEPAIRTNTTILLGNIASYLNEGTRKRVLINAFTVRALRDTFPPARGAGIMALCATSSNYDITEIATRILPNVVVLTIDPDSDVRSKAFQAIDQFLQMAKQHYEKTNIETTGGAGMESSSIPGNAGLLGWAMSSLTLKGKPSDHAPVASVSSSALTPTSSNASSVVDTPSTAPIRVNSTPDFTEHHAPTSPTSTDGWGELENGIDEEPENDKDGWDDIEPLEETKPTPALANIQAAQRRPVSQPASHVKAPILRPKSASKLSKDEDDDLWGAIAAPAPKTSKPLNLKSTATDDDDPWAAIAAPAPTTRAKPLSAGRGRGAKPAVPKLGAQRISRTSSGT 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04022 793 Gene3D Phosphorylase Kinase; domain 1 12 107 - -
Trre3g04022 793 SUPERFAMILY ARM repeat 293 551 IPR016024 -
Trre3g04022 793 ProSiteProfiles Protein kinase domain profile. 2 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g04022 793 MobiDBLite consensus disorder prediction 600 651 - -
Trre3g04022 793 SUPERFAMILY Protein kinase-like (PK-like) 38 287 IPR011009 -
Trre3g04022 793 Gene3D - 282 561 IPR011989 -
Trre3g04022 793 MobiDBLite consensus disorder prediction 689 793 - -
Trre3g04022 793 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 15 769 - -
Trre3g04022 793 ProSiteProfiles HEAT repeat profile. 366 404 IPR021133 -
Trre3g04022 793 ProSiteProfiles HEAT repeat profile. 523 561 IPR021133 -
Trre3g04022 793 MobiDBLite consensus disorder prediction 593 676 - -
Trre3g04022 793 MobiDBLite consensus disorder prediction 654 671 - -
Trre3g04022 793 Gene3D Transferase(Phosphotransferase) domain 1 110 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04022 Trre-Chr3 51545717 51558306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04022 70 291 MAP Kinase Kinase Kinase AT5G66850 23.932 1.28e-07 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL1 Trre3g04022 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04022 K08876 - gmx:100792884 1316.21