Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04016 ATGGCAAATCTCATCTTAGACTCATCCTTTGTAAAGATTCCAACTATAAAGTTTAAAAAGCTTTTCATCAATGGAGAATTCGTGGATTCAGTTTCAGGAAAAACATTTGAGACCGTTGATCCAAGAACAGAGGAAGTGATTACAAAAATAGCAGAAGCTACGAAAGAAGATGTTGATATTGCTGTCAAAGCTGCTCGTGAAGCATTTGATTTTGGTCCATGGCCACGTATGCCTGGTGCTGAAAGAGGAAAGATTATGATGAAATGGGCAGGACTAATTGAACAAAACATTGAAGAACTAGCAGCATTAGATACAATTGATGGAGGGAAGTTATATAGTTGGTGTTATGCAGTTGATGTACCTGAATCAGCCAATATTCTACGTTACTATGCTGGTGCTGCTGATAAAATTCATGGAGAAGTTTTCAAAACTTCTAGGAACCTTCATTTGTATACATTGATGGAACCTATTGGTGTTGTTGGACATATTATACCTTGGAATGTTCCTAGTGTTATGTTCTTTGCTAAGGTTGCTCCTTCTTTGGCTGCTGGTTGTACTATGGTTCTTAAGCCTGCTGAACAAACTCCTCTCTCTGCTTTGTTTTATGCTCATCTTGCTAAGGAGGCTGGTATTCCAGATGGAGTGATCAATGTACTACCAGGATTTGGTTCAACTGCTGGAGCTGCAATAGCCTCACATATGGACATTGATTCAGTAAGTTTTACAGGATCAACCGAAACAGGCCGTCGAGTAATGCAGGCCGCGGCAATGAGCAATTTGAAGCCGGTATCGCTTGAATTAGGAGGAAAATCACCTGTCTTAGTTTTTGATGATGCTGATGTTGATAAAGCTGTTGATCTTGCTCTATTTGGTATCCTACACAATAAGGGAGAAATATGTGTTGCATTTTCTAGAGTTTTTGTCCAGGAAGGAATTTATGATGAATTTGAGAAGAAAGTTGTGGAAAAGGCAAAAAATTGGGTAATTGGTGACCCTTTTCATCCTAAAGTTCAACAAGGACCACAAACTAGTAAGGTACAATTTGATAAAATCCTTTCCTATATTGAGCATGGAAAGAATGAAGGAGCTACACTATTAACTGGGGGTAAGAAACTAGGCAACAAAGGATACTACATTGAACCTACTATTTTTACCAATGTTGAGGATGACATGCTAATAGCACAAGATGAAATATTTGGACCTGTGATGGCACTTTCTAAGTTCAAGACAATTGAGGAAGCAATTAAGAAGGCAAACAATACCAAATATGGCCTAGCAGCAGGGATTGTGACAAAAGATTTGGACATAGCCAATAGTGTCTCAAGGTCAATTCGTGCAGGCATCATTTGGATTAATTGTTACTTTGCCTTTGATACTGATTGCCCTTTTGGAGGGTATAAGATGAGTGGATTTGGAAGAGATTATGGATTGGATGCACTTCACAAGTATCTTCAAGTTAAATCTGTTGCAACTCCTATTTACAATTCTCCATGGCTTTGA 1500 0.3853 MANLILDSSFVKIPTIKFKKLFINGEFVDSVSGKTFETVDPRTEEVITKIAEATKEDVDIAVKAAREAFDFGPWPRMPGAERGKIMMKWAGLIEQNIEELAALDTIDGGKLYSWCYAVDVPESANILRYYAGAADKIHGEVFKTSRNLHLYTLMEPIGVVGHIIPWNVPSVMFFAKVAPSLAAGCTMVLKPAEQTPLSALFYAHLAKEAGIPDGVINVLPGFGSTAGAAIASHMDIDSVSFTGSTETGRRVMQAAAMSNLKPVSLELGGKSPVLVFDDADVDKAVDLALFGILHNKGEICVAFSRVFVQEGIYDEFEKKVVEKAKNWVIGDPFHPKVQQGPQTSKVQFDKILSYIEHGKNEGATLLTGGKKLGNKGYYIEPTIFTNVEDDMLIAQDEIFGPVMALSKFKTIEEAIKKANNTKYGLAAGIVTKDLDIANSVSRSIRAGIIWINCYFAFDTDCPFGGYKMSGFGRDYGLDALHKYLQVKSVATPIYNSPWL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04016 499 SUPERFAMILY ALDH-like 9 495 IPR016161 GO:0016491
Trre3g04016 499 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 23 288 - -
Trre3g04016 499 FunFam Aldehyde dehydrogenase3 269 458 - -
Trre3g04016 499 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 23 487 IPR016162 GO:0016491
Trre3g04016 499 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 293 304 IPR016160 GO:0016491
Trre3g04016 499 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 269 458 IPR016163 GO:0016620
Trre3g04016 499 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 13 490 - -
Trre3g04016 499 FunFam Aldehyde dehydrogenase, putative 461 487 - -
Trre3g04016 499 Pfam Aldehyde dehydrogenase family 27 489 IPR015590 GO:0016491
Trre3g04016 499 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 265 272 IPR029510 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04016 Trre-Chr3 51420816 51425913 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04016 8 499 Aldehyde Dehydrogenase Gene Family AT3G24503 70.385 0.0 735
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05770 7 62691548 62698502 Trre3g04016 3 51420816 51425913 PCT