Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04015 ATGACTGTTTCTTCCAATGGCAAAACCAATTTTTCCTTAGAGATTCCCACCATCAAGTTCACCAAGCTCTTCATCAATGGAGAATTTGTTGATTCAATTTCAGGAAAAGAGTTTGAGACAATAGATCCAAGAACTGGAGAGGTAATAGCTAATATTGCAGAAGGAGTAAAAGAAGATATTGATGTTGCTGTAAAAGCGGCACGTGTCGCTTTCGATGATGGTCCATGGCCTCGTATGCCCGGTGTTGCAAGAGCACAAATCTTGACGAAATGGGCAGATTTAATTGAACAAAACATCGAAGAATTAGCAGCATTAGATACAATAGATGCCGGAAAATTGTATAGTTTCTGTAAAGCTGTTGATATTCCGGGAGTTGCACATACACTACGTTACTATGCCGGTGCTGCTGATAAAATTCATGGCGAGGTATTAAAACCCGCTCGGGAATTGCACGCGTATACTTTGATGGAACCGATTGGTGTTGTTGGACACATTATTCCTTGGAACTTTCCTAGTACTATGTTTGCTGCTAAGATTGCTCCTTCTTTGGCTGCTGGTTGTACTATGGTTCTTAAGCCGGCTGAACAAACACCTCTCTCTGCTTTGTTTTATGCTCATCTTGCTAAGAAGGCTGGAATTCCAGATGGAGTACTCAATGTAGTACCTGGATTTGGTCAAACTGCAGGAGCTGCATTAAGCTCACATATGGACGTTGATAAGATTAGTTTTACTGGCTCAACAGAAGTAGGCCGCGAAATAATGGTATCGGCAGCTAGAAGTAATTTGAAACCGGTTTCACTTGAATTAGGAGGAAAATCACCCCTCTTAATATTCGATGATGCCGATGTTGATAAAGCTGCTGAGCTTGCTCTCTTAGGCATTGTATTTAATAAGGGAGAAATTTGTGTTGCGGGTTCTCGTGTGTTTGTTCAAGAAGGAATCTACGACGAATTTGAGAAGAAGTTGGTGGAGAAAGCGAAAGCTTGGGTTGTTGGTGATCCTTTTGATCCTAAAGTTCAGCAAGGACCTCAGGTTGACAAGAAGCAATTTGAGAAAATTCTTTCCTATATTGAGCATGGAAAGAAAGATGGAGCAACCCTTTTGACAGGTGGTAAAAATATTGGAAACAAGGGTTACTACATAGAGCCTACAATTTTCTCTAATGTTAAGGAGGATATGCTTATAGCACAAGATGAAATATTTGGCCCTGTCATGGCATTGATGAAGTTCAAGACAATTGAGGAAGCAATTAAAAGTGCAAACAATACAAGATATGGCTTAGCAGCAGGAATTGTGACAAAGAATTTGGATATAGCAAACACTGTATCAAGGTCCATTAGAGCTGGAATTATTTGGATTAATTGCTACTTTGCCTTTGGAAATGACATTCCTTATGGAGGTTACAAGATGAGTGGTTTTGGAAGAGATTTTGGATTGGAATCATTACATAAGTATTTACAAGTTAAATCTGTTGTAACTCCCATCTACAATTCTCCTTGGCTTTGA 1506 0.3964 MTVSSNGKTNFSLEIPTIKFTKLFINGEFVDSISGKEFETIDPRTGEVIANIAEGVKEDIDVAVKAARVAFDDGPWPRMPGVARAQILTKWADLIEQNIEELAALDTIDAGKLYSFCKAVDIPGVAHTLRYYAGAADKIHGEVLKPARELHAYTLMEPIGVVGHIIPWNFPSTMFAAKIAPSLAAGCTMVLKPAEQTPLSALFYAHLAKKAGIPDGVLNVVPGFGQTAGAALSSHMDVDKISFTGSTEVGREIMVSAARSNLKPVSLELGGKSPLLIFDDADVDKAAELALLGIVFNKGEICVAGSRVFVQEGIYDEFEKKLVEKAKAWVVGDPFDPKVQQGPQVDKKQFEKILSYIEHGKKDGATLLTGGKNIGNKGYYIEPTIFSNVKEDMLIAQDEIFGPVMALMKFKTIEEAIKSANNTRYGLAAGIVTKNLDIANTVSRSIRAGIIWINCYFAFGNDIPYGGYKMSGFGRDFGLESLHKYLQVKSVVTPIYNSPWL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04015 501 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 271 460 IPR016163 GO:0016620
Trre3g04015 501 FunFam Aldehyde dehydrogenase3 271 460 - -
Trre3g04015 501 Pfam Aldehyde dehydrogenase family 30 491 IPR015590 GO:0016491
Trre3g04015 501 SUPERFAMILY ALDH-like 15 497 IPR016161 GO:0016491
Trre3g04015 501 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 6 491 - -
Trre3g04015 501 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 295 306 IPR016160 GO:0016491
Trre3g04015 501 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 267 274 IPR029510 GO:0016491
Trre3g04015 501 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 25 289 - -
Trre3g04015 501 FunFam Aldehyde dehydrogenase, putative 463 489 - -
Trre3g04015 501 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 25 489 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04015 Trre-Chr3 51372808 51388634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04015 6 501 Aldehyde Dehydrogenase Gene Family AT3G24503 72.345 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04015 K12355 - gmx:100783920 889.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05771 7 62696096 62698502 Trre3g04015 3 51372808 51388634 PCT