Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04014 ATGCCAACACGATCAACAGGAGCAATAGCACAAGATTGGGAACCAGTTGTTCTCCACAAATCAAAACCAAAAGCACAAGACCTTCGTAATCCAAAAGCCGTAAACCAAGCACTTCGAACCGGAGCTGAAGTTTTAACGGTTAAGAAATTCGATGCCGGTTCGAATAAAAAAACCGCCGGTCCTATTGTTTACGCGAGGAAATTAGATGAAGCGGCTGAACCGGCTGCGTTGGAACGAGTTGCTGGGGAAGTGAGACACACGATTCAGAAAGCGCGTTTGGATAAGAAAATGAGTCAAGCTGAATTGGCGAAATTGATTAATGAGAGGGTTCAGGTTGTTCAGGAATATGAGAATGTCAGCACATGA 366 0.4454 MPTRSTGAIAQDWEPVVLHKSKPKAQDLRNPKAVNQALRTGAEVLTVKKFDAGSNKKTAGPIVYARKLDEAAEPAALERVAGEVRHTIQKARLDKKMSQAELAKLINERVQVVQEYENVST 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04014 121 SUPERFAMILY lambda repressor-like DNA-binding domains 85 118 IPR010982 GO:0003677
Trre3g04014 121 CDD HTH_XRE 88 118 IPR001387 -
Trre3g04014 121 ProSiteProfiles Cro/C1-type HTH domain profile. 88 118 IPR001387 -
Trre3g04014 121 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 11 118 - -
Trre3g04014 121 Pfam Multiprotein bridging factor 1 11 80 IPR013729 -
Trre3g04014 121 Coils Coil 88 108 - -
Trre3g04014 121 Gene3D - 72 121 IPR010982 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04014 Trre-Chr3 51369531 51370166 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Trre3g04014 MBF1 5.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04014 K03627 - cpap:110818571 186.422
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g04014 3 51369531 51370166 Trre3g04014 3 51369531 51370166 ECH