Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04010 ATGGAAGACGATGATAGATACCCATCAAAAGGATACCCATTGAGACGCAAAAACCCTAATCTTCGTCAAAAACACCCAATTCGCAATTTACAATATCATCGTTACAACGATCCCGAAAACAACAACATCGATGATGAATACGAAGAATTCGACGATTATAATATAGATGAAGACGGAATTGAAAATGGGTATATCGGTAATTTCGAAGAAAACGAAGGGTTCATCGGTAAAAAGAGAAAATTGCGTAGCGGTGGTAGCAGTAGTGGTGGTGGTGGTAGTTCTGTTTCAAACTATGAATTGGTGCCACGTGGCAAATTCTCATACGTTAATCGCGGCGGTGGTGGCGGTGTTGTTGGTGGTGGTGGTGGTTCTTCTGGGTCAGAGGAATGGACAGAACATGCAACATTTGTGTTGTTAGAGATTTGGGGTGAAAAGTTTCTTCAACTTGGAAGAAACAGTTTGAGATCAGAGGAATGGCATGAAGTATCTGAGAAAGTTTCTGAAGAATTGAAAATTGAAAGGAGTGTTGAACAATGTAGAAGTGTATTGGATAAAGTGAAAAGAAGGTATAAGAAAGAAAAGAGTAGAATGGATGAAATGGGTTTAGGTGTAAATTCTTGTAAGTGGCCATTTTTCAAGAGAATGGATATGTTGATGTCTTCGAGTGCGAGACAAGAGTATGGACTTGCTTGCGGTGTTGATTCGGGGGAATATGTGTTTATGAATACTCGGGTTTATTTGAATAGGTCGAATGGTTTTGATGAAATGAGGGATAGTCCTGGTGAGTCTGAGGCATCTGAGGATGATAAGGGAGACGAGGACGATGACGATGATGATGGTTTCGATGAGGTGGATAAGGAAGAGGAGGAGGCTTCTTATAGGGTTTTGGCTGATTCTATTCAGAAGTTTGGGAAGATATATGAGAAGATTGAGAACACTAAGAGGCAACAGATGATGGAGTTGGAGAAGATGAGGGTGGATTTTAATAGGGAATTGGAGTTGCAGAAGAAGCAGATTTTGGAAAGGGCTCAGATAATCTCAGTGAATAATGTGTGA 1056 0.4053 MEDDDRYPSKGYPLRRKNPNLRQKHPIRNLQYHRYNDPENNNIDDEYEEFDDYNIDEDGIENGYIGNFEENEGFIGKKRKLRSGGSSSGGGGSSVSNYELVPRGKFSYVNRGGGGGVVGGGGGSSGSEEWTEHATFVLLEIWGEKFLQLGRNSLRSEEWHEVSEKVSEELKIERSVEQCRSVLDKVKRRYKKEKSRMDEMGLGVNSCKWPFFKRMDMLMSSSARQEYGLACGVDSGEYVFMNTRVYLNRSNGFDEMRDSPGESEASEDDKGDEDDDDDDGFDEVDKEEEEASYRVLADSIQKFGKIYEKIENTKRQQMMELEKMRVDFNRELELQKKQILERAQIISVNNV 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04010 351 MobiDBLite consensus disorder prediction 1 26 - -
Trre3g04010 351 MobiDBLite consensus disorder prediction 251 290 - -
Trre3g04010 351 Pfam Myb/SANT-like DNA-binding domain 128 217 IPR044822 -
Trre3g04010 351 Gene3D - 130 192 - -
Trre3g04010 351 MobiDBLite consensus disorder prediction 265 286 - -
Trre3g04010 351 Coils Coil 307 338 - -
Trre3g04010 351 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 102 345 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04010 Trre-Chr3 51348325 51351001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04010 258 345 Trihelix Transcription Factor Family AT3G14180 37.755 1.84e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre3g04010 Myb_DNA-bind_4 1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04010 - - gmx:100790166 410.609