Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04008 ATGGGAAAAGTTCAAGAGATTCATCATAATGGGGTGAACTTATCAACCCAAAGAGATTTTGTAACAAAATTCAAATCTGGGTTGAAAGAAACATTTTTTCCTGATGATCCATTTAGACAAATTATGGAAGAGGAAAAAACATCTCGTAGGTTGATTAAAGGAGTGCAATATTTTGTTCCAATTTTTGAGTGGTTACCAACTTATACTTTGAGATTATTTTTCTCTGATTTAATTGCTGGTCTCACCATTGCTAGTCTTGCAATTCCTCAAGGCATTAGTTATGCCAAACTTGCCAACCTTCCTCCTCTCGTCGGCCTATATTCAAGTTTTGTGCCACCATTAGTGTATGCTGTTTTTGGGAGTTCAAGGCACATGGCAGTTGGGACAATAGCAGCAGCATCATTGCTTATTGGCAACACAATATCAACTGTAGCAGATCATGAAACAGAACCAGCATTGTATCTTCATTTGATTTTCACAACAACATTTATCACTGGTGTTTTCCAAACTTGTTTGGGTTTTTTCAGGCTTGGGATATTAGTTGATTTCTTTTCCCATTCTACCATCACTGGCTTTATGGGAGGAACTGCAGTGATTCTAATCCTTCAACAACTAAAGGGTATATTTGGAATGAAACATTTTGCAACAAAAACTAATGCTGTGGCTGTGATTAAGGGCATCTTCACCAATAGACATGAGATAAGATGGGAAACAGCAGTTCTTGGAATAATCTTCCTTGTTTTCTTACAATTTACAAGGCACCTGAGAGTTAAAAAACCAAAACTCTTTTGGGTATCAGCAATAGCTCCAATGACAACTGTAGTAATTGGTGGCATTTTTACATACCTTGTAAAAGGTCAAAATCATGGAATTCAAATTGTGGGACATCTAGACAAAGGATTAAATCCAATATCAATCCAATATTTGAACTTTGATAGTAGATATTTATCAGCGGTGATGAGAGCTGGATTAATCACTGGAGTATTATCATTAGCGGAAGGAATAGCCATAGGAAGAAGTTTTTCTGTTACTGATAATACACCTCATGATGGGAACAAAGAGATGATAGCTTTTGGACTTATGAACTTATTTGGTTCTTTTACATCATGCTACTTGACCAGTGGACCATTTTCCAAGACAGCTGTGAATTACAATGCAGGGTGTAAAACTGCAATGGCAAATGTTGTACAAGCAATTATAATGGCTCTCACTCTACAATTTTTTGCTCCATTATTTAGTAACACACCACTTGTTGCTCTATCAGCTATTATTGTATCAGCCATGTTGGGGTTGATAAATTATACAGAAGCTATCTATCTTTTTAAAGTTGACAAATTTGATTTTGTTATTTGCATGAGTGCATTTTTGGGTGTTACCTTTATAAGTATGGACATGGGCCTCTTGATCTCTGTTGGACTAGGTTTACTTAGAGGACTATTATATACAGCTAGACCAGCAGCATGCAAGCTTGGAAAATTACCTGATTCAGGTTTATATAGAGATGTTGAACAATACTCTAATGCTTCAACAGTTCCAGGAGTTTTAATTATATTAGTTGGTTCCCCTGTTTACTTTTCAAATTCTACTTACCTCAAAGAAAGGATTTTGAGATATATTCAAAGTGAACAAAGATCTTCAGGCGATACCGTTGAACACATCATACTCGATTTTACTGGAGTGACATCCATTGACACAACTGCTATTGAAGGATTATTGGAAACAAGTAAAATATTGGAAAGAAAAGGAATTAAGATGTCATTAGTAAACCCAAGGTTGGAGGTTATGGAGAAGCTAATAGCATCAAAGTTTGTTGAACATATTGGGAAGGAAGCATTCTATCTAAATTTGGATGATGCAGTGATGGCAAGTCAATATTCACTAAGAACATCCAAGACAAACAATAATGAAGACACGGTATAA 1920 0.3578 MGKVQEIHHNGVNLSTQRDFVTKFKSGLKETFFPDDPFRQIMEEEKTSRRLIKGVQYFVPIFEWLPTYTLRLFFSDLIAGLTIASLAIPQGISYAKLANLPPLVGLYSSFVPPLVYAVFGSSRHMAVGTIAAASLLIGNTISTVADHETEPALYLHLIFTTTFITGVFQTCLGFFRLGILVDFFSHSTITGFMGGTAVILILQQLKGIFGMKHFATKTNAVAVIKGIFTNRHEIRWETAVLGIIFLVFLQFTRHLRVKKPKLFWVSAIAPMTTVVIGGIFTYLVKGQNHGIQIVGHLDKGLNPISIQYLNFDSRYLSAVMRAGLITGVLSLAEGIAIGRSFSVTDNTPHDGNKEMIAFGLMNLFGSFTSCYLTSGPFSKTAVNYNAGCKTAMANVVQAIIMALTLQFFAPLFSNTPLVALSAIIVSAMLGLINYTEAIYLFKVDKFDFVICMSAFLGVTFISMDMGLLISVGLGLLRGLLYTARPAACKLGKLPDSGLYRDVEQYSNASTVPGVLIILVGSPVYFSNSTYLKERILRYIQSEQRSSGDTVEHIILDFTGVTSIDTTAIEGLLETSKILERKGIKMSLVNPRLEVMEKLIASKFVEHIGKEAFYLNLDDAVMASQYSLRTSKTNNNEDTV 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04008 639 Pfam STAS domain 505 619 IPR002645 -
Trre3g04008 639 Gene3D STAS domain 485 626 IPR036513 -
Trre3g04008 639 ProSiteProfiles STAS domain profile. 504 623 IPR002645 -
Trre3g04008 639 PANTHER SULFATE TRANSPORTER 22 627 IPR001902 GO:0016020|GO:0055085
Trre3g04008 639 CDD STAS_SulP_like_sulfate_transporter 505 616 - -
Trre3g04008 639 Pfam Sulfate permease family 73 453 IPR011547 GO:0016020
Trre3g04008 639 SUPERFAMILY SpoIIaa-like 508 620 IPR036513 -
Trre3g04008 639 ProSitePatterns SLC26A transporters signature. 102 123 IPR018045 GO:0008271|GO:0008272
Trre3g04008 639 NCBIfam sulfate permease 60 619 IPR001902 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04008 Trre-Chr3 51314159 51321425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04008 10 631 Inorganic Solute Cotransporters AT5G19600 61.415 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04008 K17471 - gmx:100789107 939.102