Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04005 ATGAAGAATAAAGAGCATTGTTCTTATGTTATTGTTCTTTTTTCATTCTTCCTAGGTTTAACAACACTAGTAACATCATCATCTTCAAGTGTTGTTTCATCGTACCATGGGTCCCACTCTTTCCAAGCTGAAACCATGTACATCAAACATCGACAACTTCTTTACTATAGAGATGAATTTGGTGAAAGAGGTGAAAATGTTACGGTGGATCCAACCTTAGTTTTCTCAAACAACCGCATCAAAAACGCTTACGTGGCGTTACAAGCTTGGAAACAAGCTATTCTTTCTGATCCAAATAACTGTACTGTTAATTGGGTAGGTTCCAATGTATGCAACTACACTAATGTTTTCTGTGCACCCGCATTGGATAACCCTAAAATCATAACCGTCGCCGGAATCGATCTAAATCACTGTGATATCGCCGGTTATTTACCGGAAGAGCTTGGTCTTTTAACCGATCTTGCTCTTTTCCATGTCAATACTAATCGATTCTGTGGAACGGTTCCTCATAAATTTGAGAAGCTGAAAATCTTGTTTGAGTTGGATCTGAGTAATAACCGTTTCGCCGGAAAGTTTCCGGAAGTTGTTCTCCGGTTACCGGAGTTGAAGTTTTTAGATCTGAGGTTTAATGAATTTGAAGGAACTGTACCGAAAGAGCTTTTCGATAAAGATTTGGATGCGATTTTCATCAATCATAATCGATTCGTTTTCGATTTACCTGATAATTTCGGTAATTCACCGGTTTCGGTTATTGTTCTGGCGAATAACCGTTTTCACGGTTGTTTACCGGCGGGGATTGGTAACATGACGAATTTGAATGAGATAATTGCAATGAATAACGGTTTTCAGTCATGTTTGCCGGCGGAGATTGGGTTGTTGAAGAATTTGACGGTGTTTGATGTTAGTTTTAATAAGTTTTTGGGACCGTTGCCGGAAGCAGTTGGAAATGCGGTGAGTTTGGAGGTGTTGAATGTGGCGCATAATTTTCTTTCCGGTAAGATACCGGAGAGTATTTGTGCGTTACCGAATTTGCAAAATTTTACTTATTCTTATAATTTCTTTACCGGTGAACCGCCGAGATGTTTGGCTTTGCCGGAAGTGGATGATAAGAGGAATTGTTTGCCGGCGAGAAGGAATCAACGGTCGGCGAAGGAATGTAAGTCGTTTTTGTCTCACCGTGTTGATTGTAGCTCTTTTAGGTGTAAAGCTTTTGTACCTTCTTTGCCTTCACCACCACCTTCGCCAGTGTTTCCTCCTCCTGTTGTTACTCCAATATCTCCTCCGCCGTCGCCGGTGGTTTCTCCACCACCGTCGCCAGTATTTTCTCCACCGCCGCCACCACCATCACCTGTGTTTTCTCCACCACCACCAGTTTACTCTCCACCGCCGCCTCCGCCACCGGTTTATTCACCACCGCCGCCACCTCCTTCACCACCACCACCTTCACCGCCACCACCACCTCCACCGGTGTATTCACCACCTCCGCCTCCACCAGTGTATTCACCACCTCCGCCTCCACCATCACCCCCACCACCTCCACCAGTATATTCACCGCCACCACCTCCACCGGTATATTCTCCACCACCACCCCCTCCCTCACCGCCGCCACCATCTCCCCCTCCTCCAGTTTACTTACCTCCACCACCTCCACCGCCTCCACCACCACCTTCACCAATTCCTTCACCACCATATTGTGTTAGGTCTCCGCCACCTCCACCACCAAATTCACCACCTCCACCGCCTCCACCGGCTCCTGTATTCTCCCCACCACCACCTGTACCTTACTACTATAGCTCACCACCTCCACCACCTTCTCATTCACCTCCACCACCACCTCATTCACCTCCTCCACCACCTCACTCTCCTCCTCCACCTGTTTATCCCTATTTATCTCCCCCACCACCTCCTCCAGTTCACTCACCTCCCCCACCAGTCCATTCCCCACCACCACCATCTCCACCACCACCTTGTATAGAACCCCCACCACCTCCATCACCACCACCTTGTGAAGAACATTCACCTCCACCACCATATCAATCACCTTATCATCCACCACCATCCCCATCACCTCCTCCCTCACCAGTCTATGCCTCACCACCTCCACCACCAGTTCATTACAATTCACCACCACCACCACCACCGGTATATTCTTCGCCTCCTCCACCAGTTTATTACAATTCACCACCACCACCACCACCACCGGTCTATTCACCACCACCCACACCTGTATATGAAGGGCCATTACCACCAGTTGTTGGAATATCATATGCATCACCGCCGCCACCACCCTTTTATTGA 2298 0.4769 MKNKEHCSYVIVLFSFFLGLTTLVTSSSSSVVSSYHGSHSFQAETMYIKHRQLLYYRDEFGERGENVTVDPTLVFSNNRIKNAYVALQAWKQAILSDPNNCTVNWVGSNVCNYTNVFCAPALDNPKIITVAGIDLNHCDIAGYLPEELGLLTDLALFHVNTNRFCGTVPHKFEKLKILFELDLSNNRFAGKFPEVVLRLPELKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFVFDLPDNFGNSPVSVIVLANNRFHGCLPAGIGNMTNLNEIIAMNNGFQSCLPAEIGLLKNLTVFDVSFNKFLGPLPEAVGNAVSLEVLNVAHNFLSGKIPESICALPNLQNFTYSYNFFTGEPPRCLALPEVDDKRNCLPARRNQRSAKECKSFLSHRVDCSSFRCKAFVPSLPSPPPSPVFPPPVVTPISPPPSPVVSPPPSPVFSPPPPPPSPVFSPPPPVYSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPVYSPPPPPPSPPPPPPVYSPPPPPPVYSPPPPPPSPPPPSPPPPVYLPPPPPPPPPPPSPIPSPPYCVRSPPPPPPNSPPPPPPPAPVFSPPPPVPYYYSSPPPPPSHSPPPPPHSPPPPPHSPPPPVYPYLSPPPPPPVHSPPPPVHSPPPPSPPPPCIEPPPPPSPPPCEEHSPPPPYQSPYHPPPSPSPPPSPVYASPPPPPVHYNSPPPPPPVYSSPPPPVYYNSPPPPPPPVYSPPPTPVYEGPLPPVVGISYASPPPPPFY 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04005 765 FunFam Leucine-rich repeat extensin-like protein 5 246 385 - -
Trre3g04005 765 Gene3D Ribonuclease Inhibitor 84 245 IPR032675 -
Trre3g04005 765 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 21 509 - -
Trre3g04005 765 MobiDBLite consensus disorder prediction 428 447 - -
Trre3g04005 765 MobiDBLite consensus disorder prediction 452 488 - -
Trre3g04005 765 Pfam Leucine Rich Repeat 319 341 IPR001611 GO:0005515
Trre3g04005 765 PRINTS Proline rich extensin signature 423 439 - -
Trre3g04005 765 PRINTS Proline rich extensin signature 403 415 - -
Trre3g04005 765 PRINTS Proline rich extensin signature 443 455 - -
Trre3g04005 765 PRINTS Proline rich extensin signature 455 476 - -
Trre3g04005 765 Gene3D Ribonuclease Inhibitor 246 373 IPR032675 -
Trre3g04005 765 SUPERFAMILY L domain-like 84 365 - -
Trre3g04005 765 MobiDBLite consensus disorder prediction 600 623 - -
Trre3g04005 765 MobiDBLite consensus disorder prediction 565 584 - -
Trre3g04005 765 FunFam Leucine-rich repeat extensin-like protein 1 84 245 - -
Trre3g04005 765 MobiDBLite consensus disorder prediction 636 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04005 Trre-Chr3 51269550 51271847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04005 42 449 Leucine-rich Repeat extension Gene Families AT3G24480 70.660 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04005 - - ccaj:109813452 648.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g04005 3 51269550 51271847 Trre3g04005 3 51269550 51271847 ECH