Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04003 ATGGCGAGTCGAGTTAAAGAAGACGAGAAAAACGAGCGACTGATTCGTGGTCTTCTTAGACTCGAACCGAATCGGAGATGTATTAACTGTAATAGTTTGGGACCGCAATATGTGTGCACAAATTACTGGACGTTTGTTTGCACTAATTGTAGTGGAATACACCGTGAATTTACACATCGTGTGAAATCAGTTTCAATGGCTAAATTTACTTCGCAAGAAGTTACTGCACTTCAAGAAGGAGGAAATCAGCGTGCAAGAGAGATTTATTTTAAAGAATGGGATGCACAGCGTAATTCTTTCCCTGACAGCAGGCTCCGAGACTTTATTAAGCATGTTTATGTGGATAGGAGATTTACTGGGGATAGTACGTCTGACAAATCAAGAGTAAAGACTGGTGACAAAGATGGTTCAGATGAAAAGAGAAGAATTGAGGAATATCAGGGAGGATCTAAAAGCCCTCCATACGTAGACACACATGAACGTCGTTATAGTGACAGGTCTAGTCCAGGTGGAAGAAGTCCTGGATATGATCAAGAAAGTAGGCAATATGGCGATTACAAGAGAAGTCCCGGTCGTCCTCCAGTTATAACTGACTGGCGCCGTGAAGATCGTAGAACATCAGATGGAGATTATAAAGCGGAAAGCCAATCTCCTGAGAAAGCCAGAGATCTAGGCCCCTTAAGCCCACCCATGGTCCGACCCGTTAGAGATATTTTGGGAGAAAATGTAGTACCTCTTAGGATAAGTGGGCCCCCCAAACCAAACAGTGGAAAAGCTGCAGATGCCTCAGCACTGACACAGAGAACTGCATCCTCTGGTAGCTTGGTATCGACCAACGAAAGCCAAGTAGATATTAAGCTTGAGACTACTAAGAGCCTTATTGATTTTGATGCTGATCCTGAACCTATTGCTCCAACAATTTCTCAAGCCCAACACACTAGTGTGCCTCAACCGGTTTTGCAGCAAGAAAATTCCAGTGGTGAAAATTGGGCCTCTTTTGGTGTTGCTTCTGAGGAGAAAGCAAATCCAAGCGCCTCAAATTTAAATCCACTTGAATCTGAATTGTCCCAATTGTCTGTGCCAGCATCCTTACCTTCTCATGCTTCAGGAGTCCAAGGACCTAATCCAACCAGTGGTGCTTCGGTTCCATTTCCCGGATTGGCAACTGTATCATCTCTTGATAATGTAGGACATTGGGCCAGTTCACAGCATCAACAACCAACATTCCCCACCGTTGCTAGTCAACAATTTCCACCATCAGTAGGCAGTGCTGTAAATAGTCAGCCATCACATGTACCTTCTGCTGTAGAAGTAAAACCAAGTGGAAGAACAGAACTTCCTGAAGATCTGTTCACTGTAAAACACTCGTCCTTCCCTGCTCCAGGTCTTGGTTGGCAAATGGGTCTTCCCCAGGGCATGGGCATCTCAATGCAATATAATAATGCGATGCCCGTGTCAAGTTTTTCGCAGCCTTCAAGGTCAACAAATCCATTTGATGTCAGCAGCAAACAAACCCGAGATCAAGCCCCAAGTTTTCCTTCCGTGTCATCCTTGCATGGTGCCATGCCTAATATACCACCTTCAGGCACTATGTACCCTTCAAGCCAGGGCAATCCATCCCGTGCCTGGACTCCAACCCCAGCGTCATCATATGCATCAGTCCTGCCTCAACAAGCACACACTCATGCATCAACATTGGGAGCAGGGTCATACATGGGGCAACCAACAGCAGCCAACATACCAATGCCAAGGCAAGAAACTGGGAACTTTGGAACTGAAGGATACATTTTTGGATTGTCAAATCCAGATCAGCAGCTGACTCATAGGCCGTCAACCACTCCCACCTCTAACCCCTTCCCTAAAGGAGGGAACCCATTCGGATAA 1884 0.4565 MASRVKEDEKNERLIRGLLRLEPNRRCINCNSLGPQYVCTNYWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVTALQEGGNQRAREIYFKEWDAQRNSFPDSRLRDFIKHVYVDRRFTGDSTSDKSRVKTGDKDGSDEKRRIEEYQGGSKSPPYVDTHERRYSDRSSPGGRSPGYDQESRQYGDYKRSPGRPPVITDWRREDRRTSDGDYKAESQSPEKARDLGPLSPPMVRPVRDILGENVVPLRISGPPKPNSGKAADASALTQRTASSGSLVSTNESQVDIKLETTKSLIDFDADPEPIAPTISQAQHTSVPQPVLQQENSSGENWASFGVASEEKANPSASNLNPLESELSQLSVPASLPSHASGVQGPNPTSGASVPFPGLATVSSLDNVGHWASSQHQQPTFPTVASQQFPPSVGSAVNSQPSHVPSAVEVKPSGRTELPEDLFTVKHSSFPAPGLGWQMGLPQGMGISMQYNNAMPVSSFSQPSRSTNPFDVSSKQTRDQAPSFPSVSSLHGAMPNIPPSGTMYPSSQGNPSRAWTPTPASSYASVLPQQAHTHASTLGAGSYMGQPTAANIPMPRQETGNFGTEGYIFGLSNPDQQLTHRPSTTPTSNPFPKGGNPFG 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04003 627 MobiDBLite consensus disorder prediction 297 327 - -
Trre3g04003 627 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Trre3g04003 627 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Trre3g04003 627 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Trre3g04003 627 Pfam Putative GTPase activating protein for Arf 14 119 IPR001164 GO:0005096
Trre3g04003 627 MobiDBLite consensus disorder prediction 398 440 - -
Trre3g04003 627 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 131 - -
Trre3g04003 627 SMART arf_gap_3 12 126 IPR001164 GO:0005096
Trre3g04003 627 SUPERFAMILY ArfGap/RecO-like zinc finger 11 119 IPR037278 -
Trre3g04003 627 MobiDBLite consensus disorder prediction 363 383 - -
Trre3g04003 627 MobiDBLite consensus disorder prediction 194 219 - -
Trre3g04003 627 MobiDBLite consensus disorder prediction 120 284 - -
Trre3g04003 627 CDD ArfGap_AGFG 12 118 - -
Trre3g04003 627 MobiDBLite consensus disorder prediction 486 549 - -
Trre3g04003 627 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Trre3g04003 627 PANTHER ARFGAP/RECO-RELATED 395 627 IPR044820 GO:0005096
Trre3g04003 627 MobiDBLite consensus disorder prediction 583 627 - -
Trre3g04003 627 MobiDBLite consensus disorder prediction 120 147 - -
Trre3g04003 627 MobiDBLite consensus disorder prediction 260 284 - -
Trre3g04003 627 MobiDBLite consensus disorder prediction 598 620 - -
Trre3g04003 627 MobiDBLite consensus disorder prediction 306 327 - -
Trre3g04003 627 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 126 IPR001164 GO:0005096
Trre3g04003 627 MobiDBLite consensus disorder prediction 398 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04003 Trre-Chr3 51230128 51239431 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04003 12 89 C2H2 Transcription Factor Family AT4G05330 37.805 1.67e-10 61.2