Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04002 ATGGCGAGTCGAGTTAAAGAAGACGAGAAAAACGAGCGACTGATTCGTGGTCTTCTTAGACTCGAACCGAATCGGAGATGTATTAACTGTAATAGTTTGGGACCGCAATATGTGTGCACAAATTACTGGACGTTTGTTTGCACTAATTGTAGTGGAATACACCGTGAATTTACACATCGTGTGAAATCAGTTTCAATGGCTAAATTTACTTCGCAAGAAGTTACTGCACTTCAAGAAGGAGGAAATCAGCGTGCAAGAGAGATTTATTTTAAAGAATGGGATGCACAGCGTAATTCTTTCCCTGACAGCAGTAATGTAAACAGGCTCCGAGACTTTATTAAGCATGTTTATGTGGATAGGAGATTTACTGGGGATAGTACGTCTGACAAATCAAGAGGTGACAAAGATGGTTCAGATGAAAAGAGAAGAATTGAGGAATATCAGGGAGGATCTAAAAGCCCTCCATACGTAGACACACATGAACGTCGTTATAGTGACAGGTCTAGTCCAGGTGGAAGAAGTCCTGGATATGATCAAGAAAGTAGGCAATATGGCGATTACAAGAGAAGTCCCGGTCGTCCTCCAGTTATAACTGACTGGCGCCGTGAAGATCGTAGAACATCAGATGGAGATTATAAAGCGGAAAGCCAATCTCCTGAGAAAGCCAGAGATCTAGGCCCCTTAAGCCCACCCATGGTCCGACCCGTTAGAGATATTTTGGGAGAAAATGTAGTACCTCTTAGGATAAGTGGGCCCCCCAAACCAAACAGTGGAAAAGCTGCAGATGCCTCAGCACTGACACAGAGAACTGCATCCTCTGGTAGCTTGGTATCGACCAACGAAAGCCAAGTAGATATTAAGCTTGAGACTACTAAGAGCCTTATTGATTTTGATGCTGATCCTGAACCTATTGCTCCAACAATTTCTCAAGCCCAACACACTAGTGTGCCTCAACCGGTTTTGCAGCAAGAAAATTCCAGTGGTGAAAATTGGGCCTCTTTTGGTGTTGCTTCTGAGGAGAAAGCAAATCCAAGCGCCTCAAATTTAAATCCACTTGAATCTGAATTGTCCCAATTGTCTGTGCCAGCATCCTTACCTTCTCATGCTTCAGGAGTCCAAGGACCTAATCCAACCAGTGGTGCTTCGGTTCCATTTCCCGGATTGGCAACTGTATCATCTCTTGATAATGTAGGACATTGGGCCAGTTCACAGCATCAACAACCAACATTCCCCACCGTTGCTAGTCAACAATTTCCACCATCAGTAGGCAGTGCTGTAAATAGTCAGCCATCACATGTACCTTCTGCTGTAGAAGTAAAACCAAGTGGAAGAACAGAACTTCCTGAAGATCTGTTCACTGTAAAACACTCGTCCTTCCCTGCTCCAGGTCTTGGTTGGCAAATGGGTCTTCCCCAGGGCATGGGCATCTCAATGCAATATAATAATGCGATGCCCGTGTCAAGTTTTTCGCAGCCTTCAAGGTCAACAAATCCATTTGATGTCAGCAGCAAACAAACCCGAGATCAAGCCCCAAGTTTTCCTTCCGTGTCATCCTTGCATGGTGCGCTGCCTAGTGTATCGCCATCACTCCCGATGCAGCTTCCAAACCTGAGCAATCCATTGCATGCATGGAGTCCACCCTTGCCTAATGCAGGCACAATGCACTCTTCAAGCCTGGGTCATCCACCACATGCATGGACTCCTCCCCTGCCACCCTTTCAAGGTGCCATGCCTAATATACCACCTTCAGGCACTATGTACCCTTCAAGCCAGGGCAATCCATCCCGTGCCTGGACTCCAACCCCAGCGTCATCATATGCATCAGTCCTGCCTCAACAAGCACACACTCATGCATCAACATTGGGAGCAGGGTCATACATGGGGCAACCAACAGCAGCCAACATACCAATGCCAAGGCAAGAAACTGGGAACTTTGGAACTGAAGGATACATTTTTGGATTGTCAAATCCAGATCAGCAGCTGACTCATAGGCCGTCAACCACTCCCACCTCTAACCCCTTCCCTAAAGGAGGGAACCCATTCGGATAA 2049 0.4636 MASRVKEDEKNERLIRGLLRLEPNRRCINCNSLGPQYVCTNYWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVTALQEGGNQRAREIYFKEWDAQRNSFPDSSNVNRLRDFIKHVYVDRRFTGDSTSDKSRGDKDGSDEKRRIEEYQGGSKSPPYVDTHERRYSDRSSPGGRSPGYDQESRQYGDYKRSPGRPPVITDWRREDRRTSDGDYKAESQSPEKARDLGPLSPPMVRPVRDILGENVVPLRISGPPKPNSGKAADASALTQRTASSGSLVSTNESQVDIKLETTKSLIDFDADPEPIAPTISQAQHTSVPQPVLQQENSSGENWASFGVASEEKANPSASNLNPLESELSQLSVPASLPSHASGVQGPNPTSGASVPFPGLATVSSLDNVGHWASSQHQQPTFPTVASQQFPPSVGSAVNSQPSHVPSAVEVKPSGRTELPEDLFTVKHSSFPAPGLGWQMGLPQGMGISMQYNNAMPVSSFSQPSRSTNPFDVSSKQTRDQAPSFPSVSSLHGALPSVSPSLPMQLPNLSNPLHAWSPPLPNAGTMHSSSLGHPPHAWTPPLPPFQGAMPNIPPSGTMYPSSQGNPSRAWTPTPASSYASVLPQQAHTHASTLGAGSYMGQPTAANIPMPRQETGNFGTEGYIFGLSNPDQQLTHRPSTTPTSNPFPKGGNPFG 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04002 682 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Trre3g04002 682 PANTHER ARFGAP/RECO-RELATED 1 682 IPR044820 GO:0005096
Trre3g04002 682 MobiDBLite consensus disorder prediction 261 284 - -
Trre3g04002 682 Pfam Putative GTPase activating protein for Arf 14 123 IPR001164 GO:0005096
Trre3g04002 682 MobiDBLite consensus disorder prediction 307 328 - -
Trre3g04002 682 MobiDBLite consensus disorder prediction 653 675 - -
Trre3g04002 682 MobiDBLite consensus disorder prediction 399 435 - -
Trre3g04002 682 MobiDBLite consensus disorder prediction 195 220 - -
Trre3g04002 682 MobiDBLite consensus disorder prediction 123 148 - -
Trre3g04002 682 MobiDBLite consensus disorder prediction 399 444 - -
Trre3g04002 682 MobiDBLite consensus disorder prediction 123 234 - -
Trre3g04002 682 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Trre3g04002 682 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Trre3g04002 682 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Trre3g04002 682 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Trre3g04002 682 Gene3D Arf GTPase activating protein 1 135 IPR038508 -
Trre3g04002 682 MobiDBLite consensus disorder prediction 300 328 - -
Trre3g04002 682 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Trre3g04002 682 CDD ArfGap_AGFG 12 122 - -
Trre3g04002 682 MobiDBLite consensus disorder prediction 364 384 - -
Trre3g04002 682 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Trre3g04002 682 MobiDBLite consensus disorder prediction 246 284 - -
Trre3g04002 682 MobiDBLite consensus disorder prediction 644 682 - -
Trre3g04002 682 MobiDBLite consensus disorder prediction 487 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04002 Trre-Chr3 51230128 51239431 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04002 12 122 C2H2 Transcription Factor Family AT4G21160 32.759 5.54e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04002 - - psat:127116115 892.108