Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04001 ATGGCGAGTCGAGTTAAAGAAGACGAGAAAAACGAGCGACTGATTCGTGGTCTTCTTAGACTCGAACCGAATCGGAGATGTATTAACTGTAATAGTTTGGGACCGCAATATGTGTGCACAAATTACTGGACGTTTGTTTGCACTAATTGTAGTGGAATACACCGTGAATTTACACATCGTGTGAAATCAGTTTCAATGGCTAAATTTACTTCGCAAGAAGTTACTGCACTTCAAGAAGGAGGAAATCAGCGTGCAAGAGAGATTTATTTTAAAGAATGGGATGCACAGCGTAATTCTTTCCCTGACAGCAGTAATGTAAACAGGCTCCGAGACTTTATTAAGCATGTTTATGTGGATAGGAGATTTACTGGGGATAGTACGTCTGACAAATCAAGAGTAAAGACTGGTGACAAAGATGGTTCAGATGAAAAGAGAAGAATTGAGGAATATCAGGGAGGATCTAAAAGCCCTCCATACGTAGACACACATGAACGTCGTTATAGTGACAGGTCTAGTCCAGGTGGAAGAAGTCCTGGATATGATCAAGAAAGTAGGCAATATGGCGATTACAAGAGAAGTCCCGGTCGTCCTCCAGTTATAACTGACTGGCGCCGTGAAGATCGTAGAACATCAGATGGAGATTATAAAGCGGAAAGCCAATCTCCTGAGAAAGCCAGAGATCTAGGCCCCTTAAGCCCACCCATGGTCCGACCCGTTAGAGATATTTTGGGAGAAAATGTAGTACCTCTTAGGATAAGTGGGCCCCCCAAACCAAACAGTGGAAAAGCTGCAGATGCCTCAGCACTGACACAGAGAACTGCATCCTCTGGTAGCTTGGTATCGACCAACGAAAGCCAAGTAGATATTAAGCTTGAGACTACTAAGAGCCTTATTGATTTTGATGCTGATCCTGAACCTATTGCTCCAACAATTTCTCAAGCCCAACACACTAGTGTGCCTCAACCGGTTTTGCAGCAAGAAAATTCCAGTGGTGAAAATTGGGCCTCTTTTGGTGTTGCTTCTGAGGAGAAAGCAAATCCAAGCGCCTCAAATTTAAATCCACTTGAATCTGAATTGTCCCAATTGTCTGTGCCAGCATCCTTACCTTCTCATGCTTCAGGAGTCCAAGGACCTAATCCAACCAGTGGTGCTTCGGTTCCATTTCCCGGATTGGCAACTGTATCATCTCTTGATAATGTAGGACATTGGGCCAGTTCACAGCATCAACAACCAACATTCCCCACCGTTGCTAGTCAACAATTTCCACCATCAGTAGGCAGTGCTGTAAATAGTCAGCCATCACATGTACCTTCTGCTGTAGAAGTAAAACCAAGTGGAAGAACAGAACTTCCTGAAGATCTGTTCACTGTAAAACACTCGTCCTTCCCTGCTCCAGGTCTTGGTTGGCAAATGGGTCTTCCCCAGGGCATGGGCATCTCAATGCAATATAATAATGCGATGCCCGTGTCAAGTTTTTCGCAGCCTTCAAGGTCAACAAATCCATTTGATGTCAGCAGCAAACAAACCCGAGATCAAGCCCCAAGTTTTCCTTCCGTGTCATCCTTGCATGGTGCCATGCCTAATATACCACCTTCAGGCACTATGTACCCTTCAAGCCAGGGCAATCCATCCCGTGCCTGGACTCCAACCCCAGCGTCATCATATGCATCAGTCCTGCCTCAACAAGCACACACTCATGCATCAACATTGGGAGCAGGGTCATACATGGGGCAACCAACAGCAGCCAACATACCAATGCCAAGGCAAGAAACTGGGAACTTTGGAACTGAAGGATACATTTTTGGATTGTCAAATCCAGATCAGCAGCTGACTCATAGGCCGTCAACCACTCCCACCTCTAACCCCTTCCCTAAAGGAGGGAACCCATTCGGATAA 1896 0.4552 MASRVKEDEKNERLIRGLLRLEPNRRCINCNSLGPQYVCTNYWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVTALQEGGNQRAREIYFKEWDAQRNSFPDSSNVNRLRDFIKHVYVDRRFTGDSTSDKSRVKTGDKDGSDEKRRIEEYQGGSKSPPYVDTHERRYSDRSSPGGRSPGYDQESRQYGDYKRSPGRPPVITDWRREDRRTSDGDYKAESQSPEKARDLGPLSPPMVRPVRDILGENVVPLRISGPPKPNSGKAADASALTQRTASSGSLVSTNESQVDIKLETTKSLIDFDADPEPIAPTISQAQHTSVPQPVLQQENSSGENWASFGVASEEKANPSASNLNPLESELSQLSVPASLPSHASGVQGPNPTSGASVPFPGLATVSSLDNVGHWASSQHQQPTFPTVASQQFPPSVGSAVNSQPSHVPSAVEVKPSGRTELPEDLFTVKHSSFPAPGLGWQMGLPQGMGISMQYNNAMPVSSFSQPSRSTNPFDVSSKQTRDQAPSFPSVSSLHGAMPNIPPSGTMYPSSQGNPSRAWTPTPASSYASVLPQQAHTHASTLGAGSYMGQPTAANIPMPRQETGNFGTEGYIFGLSNPDQQLTHRPSTTPTSNPFPKGGNPFG 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04001 631 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Trre3g04001 631 Gene3D Arf GTPase activating protein 1 135 IPR038508 -
Trre3g04001 631 MobiDBLite consensus disorder prediction 402 439 - -
Trre3g04001 631 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Trre3g04001 631 Pfam Putative GTPase activating protein for Arf 14 123 IPR001164 GO:0005096
Trre3g04001 631 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Trre3g04001 631 MobiDBLite consensus disorder prediction 367 387 - -
Trre3g04001 631 MobiDBLite consensus disorder prediction 198 223 - -
Trre3g04001 631 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Trre3g04001 631 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Trre3g04001 631 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Trre3g04001 631 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Trre3g04001 631 PANTHER ARFGAP/RECO-RELATED 399 631 IPR044820 GO:0005096
Trre3g04001 631 MobiDBLite consensus disorder prediction 124 288 - -
Trre3g04001 631 MobiDBLite consensus disorder prediction 490 553 - -
Trre3g04001 631 MobiDBLite consensus disorder prediction 302 331 - -
Trre3g04001 631 MobiDBLite consensus disorder prediction 587 631 - -
Trre3g04001 631 CDD ArfGap_AGFG 12 122 - -
Trre3g04001 631 MobiDBLite consensus disorder prediction 124 151 - -
Trre3g04001 631 MobiDBLite consensus disorder prediction 264 288 - -
Trre3g04001 631 MobiDBLite consensus disorder prediction 602 624 - -
Trre3g04001 631 MobiDBLite consensus disorder prediction 310 331 - -
Trre3g04001 631 MobiDBLite consensus disorder prediction 402 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04001 Trre-Chr3 51230128 51239431 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04001 12 122 C2H2 Transcription Factor Family AT4G21160 32.759 4.77e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04001 - - gmx:102669541 890.567