Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04000 ATGGCGAGTCGAGTTAAAGAAGACGAGAAAAACGAGCGACTGATTCGTGGTCTTCTTAGACTCGAACCGAATCGGAGATGTATTAACTGTAATAGTTTGGGACCGCAATATGTGTGCACAAATTACTGGACGTTTGTTTGCACTAATTGTAGTGGAATACACCGTGAATTTACACATCGTGTGAAATCAGTTTCAATGGCTAAATTTACTTCGCAAGAAGTTACTGCACTTCAAGAAGGAGGAAATCAGCGTGCAAGAGAGATTTATTTTAAAGAATGGGATGCACAGCGTAATTCTTTCCCTGACAGCAGTAATGTAAACAGGCTCCGAGACTTTATTAAGCATGTTTATGTGGATAGGAGATTTACTGGGGATAGTACGTCTGACAAATCAAGAGTAAAGACTGGTGACAAAGATGGTTCAGATGAAAAGAGAAGAATTGAGGAATATCAGGGAGGATCTAAAAGCCCTCCATACGTAGACACACATGAACGTCGTTATAGTGACAGGTCTAGTCCAGGTGGAAGAAGTCCTGGATATGATCAAGAAAGTAGGCAATATGGCGATTACAAGAGAAGTCCCGGTCGTCCTCCAGTTATAACTGACTGGCGCCGTGAAGATCGTAGAACATCAGATGGAGATTATAAAGCGGAAAGCCAATCTCCTGAGAAAGCCAGAGATCTAGGCCCCTTAAGCCCACCCATGGTCCGACCCGTTAGAGATATTTTGGGAGAAAATGTAGTACCTCTTAGGATAAGTGGGCCCCCCAAACCAAACAGTGGAAAAGCTGCAGATGCCTCAGCACTGACACAGAGAACTGCATCCTCTGGTAGCTTGGTATCGACCAACGAAAGCCAAGTAGATATTAAGCTTGAGACTACTAAGAGCCTTATTGATTTTGATGCTGATCCTGAACCTATTGCTCCAACAATTTCTCAAGCCCAACACACTAGTGTGCCTCAACCGGTTTTGCAGCAAGAAAATTCCAGTGGTGAAAATTGGGCCTCTTTTGGTGTTGCTTCTGAGGAGAAAGCAAATCCAAGCGCCTCAAATTTAAATCCACTTGAATCTGAATTGTCCCAATTGTCTGTGCCAGCATCCTTACCTTCTCATGCTTCAGGAGTCCAAGGACCTAATCCAACCAGTGGTGCTTCGGTTCCATTTCCCGGATTGGCAACTGTATCATCTCTTGATAATGTAGGACATTGGGCCAGTTCACAGCATCAACAACCAACATTCCCCACCGTTGCTAGTCAACAATTTCCACCATCAGTAGGCAGTGCTGTAAATAGTCAGCCATCACATGTACCTTCTGCTGTAGAAGTAAAACCAAGTGGAAGAACAGAACTTCCTGAAGATCTGTTCACTGTAAAACACTCGTCCTTCCCTGCTCCAGGTCTTGGTTGGCAAATGGGTCTTCCCCAGGGCATGGGCATCTCAATGCAATATAATAATGCGATGCCCGTGTCAAGTTTTTCGCAGCCTTCAAGGTCAACAAATCCATTTGATGTCAGCAGCAAACAAACCCGAGATCAAGCCCCAAGTTTTCCTTCCGTGTCATCCTTGCATGGTGCGCTGCCTAGTGTATCGCCATCACTCCCGATGCAGCTTCCAAACCTGAGCAATCCATTGCATGCATGGAGTCCACCCTTGCCTAATGCAGGCACAATGCACTCTTCAAGCCTGGGTCATCCACCACATGCATGGACTCCTCCCCTGCCACCCTTTCAAGGTGCCATGCCTAATATACCACCTTCAGGCACTATGTACCCTTCAAGCCAGGGCAATCCATCCCGTGCCTGGACTCCAACCCCAGCGTCATCATATGCATCAGTCCTGCCTCAACAAGCACACACTCATGCATCAACATTGGGAGCAGGGTCATACATGGGGCAACCAACAGCAGCCAACATACCAATGCCAAGGCAAGAAACTGGGAACTTTGGAACTGAAGGATACATTTTTGGATTGTCAAATCCAGATCAGCAGCTGACTCATAGGCCGTCAACCACTCCCACCTCTAACCCCTTCCCTAAAGGAGGGAACCCATTCGGATAA 2058 0.4631 MASRVKEDEKNERLIRGLLRLEPNRRCINCNSLGPQYVCTNYWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVTALQEGGNQRAREIYFKEWDAQRNSFPDSSNVNRLRDFIKHVYVDRRFTGDSTSDKSRVKTGDKDGSDEKRRIEEYQGGSKSPPYVDTHERRYSDRSSPGGRSPGYDQESRQYGDYKRSPGRPPVITDWRREDRRTSDGDYKAESQSPEKARDLGPLSPPMVRPVRDILGENVVPLRISGPPKPNSGKAADASALTQRTASSGSLVSTNESQVDIKLETTKSLIDFDADPEPIAPTISQAQHTSVPQPVLQQENSSGENWASFGVASEEKANPSASNLNPLESELSQLSVPASLPSHASGVQGPNPTSGASVPFPGLATVSSLDNVGHWASSQHQQPTFPTVASQQFPPSVGSAVNSQPSHVPSAVEVKPSGRTELPEDLFTVKHSSFPAPGLGWQMGLPQGMGISMQYNNAMPVSSFSQPSRSTNPFDVSSKQTRDQAPSFPSVSSLHGALPSVSPSLPMQLPNLSNPLHAWSPPLPNAGTMHSSSLGHPPHAWTPPLPPFQGAMPNIPPSGTMYPSSQGNPSRAWTPTPASSYASVLPQQAHTHASTLGAGSYMGQPTAANIPMPRQETGNFGTEGYIFGLSNPDQQLTHRPSTTPTSNPFPKGGNPFG 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04000 685 MobiDBLite consensus disorder prediction 124 287 - -
Trre3g04000 685 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Trre3g04000 685 MobiDBLite consensus disorder prediction 647 685 - -
Trre3g04000 685 MobiDBLite consensus disorder prediction 490 522 - -
Trre3g04000 685 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Trre3g04000 685 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Trre3g04000 685 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Trre3g04000 685 PANTHER ARFGAP/RECO-RELATED 1 685 IPR044820 GO:0005096
Trre3g04000 685 MobiDBLite consensus disorder prediction 402 439 - -
Trre3g04000 685 MobiDBLite consensus disorder prediction 264 287 - -
Trre3g04000 685 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Trre3g04000 685 MobiDBLite consensus disorder prediction 656 678 - -
Trre3g04000 685 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Trre3g04000 685 MobiDBLite consensus disorder prediction 367 387 - -
Trre3g04000 685 MobiDBLite consensus disorder prediction 198 223 - -
Trre3g04000 685 MobiDBLite consensus disorder prediction 302 331 - -
Trre3g04000 685 CDD ArfGap_AGFG 12 122 - -
Trre3g04000 685 MobiDBLite consensus disorder prediction 124 151 - -
Trre3g04000 685 Pfam Putative GTPase activating protein for Arf 14 123 IPR001164 GO:0005096
Trre3g04000 685 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Trre3g04000 685 Gene3D Arf GTPase activating protein 1 135 IPR038508 -
Trre3g04000 685 MobiDBLite consensus disorder prediction 310 331 - -
Trre3g04000 685 MobiDBLite consensus disorder prediction 402 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04000 Trre-Chr3 51230128 51239431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04000 12 122 C2H2 Transcription Factor Family AT4G21160 32.759 5.00e-11 62.8