Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03997 ATGACTGTAAAGAAACAGGACTCGAAAAAAGTTTCTGGCCTCAGCAATCAATGTTCAAGGAAGCAACATCGCAAGGGAGAAAACCCTATTCGATTTGTACCAGCTGCTGACCCTCCTCTTGATAATGGACACACAAACTCATGGATTTGCAAGAACTCCGCTTGCAGGGCAGTTTTATCCAAAGAGGACACATTCTGTAGACGGTGCTCGTGCTGTATTTGCCATCTTTTCGACGACAACAAGGATCCTAGTCTTTGGTTGGTATGCAGTGAATCTTCTCAAGGGGACTCATGCGGGTTGTCTTGCCATATTGAGTGTGCTCTTCAACATGAGAAAGTAGGAGTTGTTGATCATGGACAGCTTATGCAACTCGATGGTGGTTATTGTTGTGCCTCCTGCGGTAAAGTTACCGGCATACTTGGATGCTGGAAGAAGCAGCTAAATATAGCGAAAGATGCTCGGCGTGTTGATGTACTGTGTTACAGGATATATTTGAGTTACAGGCTTCTGAACGGTACTTTGAGATTTAAAGAATTGCATGATATGGTACAAGAGGCAAAAGCTAAACTCGAAAAGGAAGTTGGTCCGGTTAACGGTGTTTCTTCCAAGATGGTACGTGGCATTGTCAGCAGACTCCCTATTGCTAGCGATGTGCAGAACCTATGTTCTCTTGCTATCGAGAAAGCTGATGAGTTGTTGGCCACTGATGACAATCCGGAATCCAAAGAGGGTTCACTTCCTGCGGCATGTAAGTTTGTGTTTGAAGAGATAACAGATTCCTCGGTCAAAATCATTCTACTTGAAATGTCCAATGTAACTTCTGAGGACATTAAGGGATACAAGCTCTGGTATTACAAGACTAGGGGAGAATCACACACAGAAGAACCTGTTTGTGTGTTTCCAAATGATCAGAGGAGGATTTTGATATCCAATCTTCAGGCTTGCACAGAATATACTTTTCGGATTGTATCTTATACAGAAAACGGTGACCTCGGTCATTCTGAGGCTAAGTGTTTCACCAAAAGCGTTGAGATATTTGTAAAGAAACCGACTTCTTCAATTGACATGAATATTACAAAGGAGGATACTCAAAGTGGAGAAGGCAATGAATCGGGCTCAAAACTGGAGATTGATCCCTCAATGACATACTCCGGATTCAAGGTTCGAGACCTTGGAAAAATCTTGCACCTAGCTTGGGCTCAAGAACAAGGTTGCTTAGAGGAGTTCTGCCGTGCCGATATGAAAAATTGCTGTGGTCAAAGTGAAAAGATCAAAAACCCTATCATCAACCTGGAAGAGCGGTCGGCACCGCCTTTGGTTTCTAGAGACCTTGATCTGAATGTTGTTTCTATGCCTGACTTAAACGAAGAACTCACTCCTCCTTTCGAGTCTTCTCGTGATGAAGACAATGGTTGCACTTTGCAGCAGGCTGTTGAGGCAGATGATGCAGCCTCTCATGATTTAGAGAAAAACCTAGCAAGGCCACACGGTAGTGGTGGTTCCGAAACCTGGAACCACAGACCAACTGAAGAAGTTCCGGCTGTTGACTCCCGTGTAGTCTTAGAAGCAAGTAGGAAAAGGGTAGCAAGTACAAATGAAGAAACACATGACTGTGACAGCACTTTAATCAACGGTTCTCCTTTACATGTATCCGATGGTTCGTTCTCCTTAGACGAGAACTTTGAGTATTGTGTTAAAGTAATTCGTTGGCTAGAATGTCAGGGTCATATCAACAAAGAGTTTAGGTTGAAATTGCTTACATGGTTTAGTTTGAGGTCGACCGAACAAGAACGTAGGGTGGTTAATACTTTCATTCAGACACTGATCGATGATCCGAGTAGTTTGGCAGGCCAACTAGTTGACTCATTTTCTGATATTATATCCAACAAGAGGCCAAGAAATGGATTCAGTAACAAGGCTGTGGCATTAAATTAA 1935 0.431 MTVKKQDSKKVSGLSNQCSRKQHRKGENPIRFVPAADPPLDNGHTNSWICKNSACRAVLSKEDTFCRRCSCCICHLFDDNKDPSLWLVCSESSQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLNGTLRFKELHDMVQEAKAKLEKEVGPVNGVSSKMVRGIVSRLPIASDVQNLCSLAIEKADELLATDDNPESKEGSLPAACKFVFEEITDSSVKIILLEMSNVTSEDIKGYKLWYYKTRGESHTEEPVCVFPNDQRRILISNLQACTEYTFRIVSYTENGDLGHSEAKCFTKSVEIFVKKPTSSIDMNITKEDTQSGEGNESGSKLEIDPSMTYSGFKVRDLGKILHLAWAQEQGCLEEFCRADMKNCCGQSEKIKNPIINLEERSAPPLVSRDLDLNVVSMPDLNEELTPPFESSRDEDNGCTLQQAVEADDAASHDLEKNLARPHGSGGSETWNHRPTEEVPAVDSRVVLEASRKRVASTNEETHDCDSTLINGSPLHVSDGSFSLDENFEYCVKVIRWLECQGHINKEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRPRNGFSNKAVALN 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03997 644 PANTHER VIN3-LIKE PROTEIN 2-RELATED 7 639 IPR044514 GO:0010048|GO:0040029
Trre3g03997 644 ProSiteProfiles Fibronectin type-III domain profile. 246 345 IPR003961 GO:0005515
Trre3g03997 644 MobiDBLite consensus disorder prediction 1 31 - -
Trre3g03997 644 Pfam Fibronectin type III domain 252 332 IPR003961 GO:0005515
Trre3g03997 644 MobiDBLite consensus disorder prediction 490 516 - -
Trre3g03997 644 CDD FN3 251 330 IPR003961 GO:0005515
Trre3g03997 644 Gene3D Immunoglobulins 240 344 IPR013783 -
Trre3g03997 644 Pfam PHD - plant homeodomain finger protein 50 167 IPR032881 -
Trre3g03997 644 SUPERFAMILY Fibronectin type III 252 330 IPR036116 GO:0005515
Trre3g03997 644 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03997 Trre-Chr3 51182858 51185579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03997 46 635 PHD Gene Family AT3G24440 49.175 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03997 - - gmx:100780157 1073.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g03997 3 51182858 51185579 Trre3g03997 3 51182858 51185579 ECH