Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03993 ATGATGAATCCTAAGAATTCAGTTTCACAGATTAAGAGACTTATTGGGAAGAAGTTTTCTGATGAGTCTTTGCCTTTTAGTGTCAGTGAAGGACCTGATGGGTGTCCTTTGATTCATGCTAGGTATTTAGGGGAAGTTAAGACGTTTACTCCTACGCAAGTGTTTGCGATGATGTTGTCGAATATGAAAGAGATTGCTACGAAAAATCTTAATGATGCGGTTCATGACTGTTGCATTGCGATTCCGGTTTATTTTACTGATCTTCAGAGAAGGGCTGTTTTGCACCCACTTCGGTTGCTTCATGAAACTACTGCGACTGCATTGGCGTATGGGATTTATAAGACGGATTTGTCCGAAACTGATCCTCTGAATGTGGCTTTTGTGGATATTGGACATGCCACTATGCAGGTGTGCATTGCTGGATTCAAAAAGGGGCAGCTGAAAGTGGTGGCTCATTTGTTCGATAGGTCTCTTGGTGGTAGGGATTTTGATGAGGTTTTGTTCCATCATTTTGCTGGGAAGTTTAAGGAGGAGTACAAAATTGATGTGCTTCAGAATGCTAGGGCATGTTTGAGGCTTAGGGCTGCTTGTGAGAAGATGAAGAAGATGCTCAGTGCAAATTTTGTGGTGCTCTTGAACATTGAGTGCTTGATGGATGAGAAGGATGTGAAGGGTATCATGAAGCGTGATGAGTTTGAGGAACCGAGTCTCCCGATTTTGGAGCGTGTCAAGGGTCCTTTGGAAAAGGCACTTGCTGTTGCTGACGCAGGACTCTCAGTCGATGATATACATATAGTTGAGGTAGTTGGTTCAGGATCTCGTGTACCGGCTATAAACAAAATATTGACTGAGTTTTTCAAGAAGGAGCCTAGGCGGACAATGAACGCGAGTGAATGTGTTGCTAAAGGAGCTGCATTGCAATGTGCTATTCTTAGCCCAACGTTTAAAGTCCGAGAATTTCAGGTCAACGAAAGCTTTCCCTTTTCAATTTCTCTTGCATGGAAAGGTTCTGGTCTAGATGCACAGGATAGTGTACCTGATAATCAGCTGAATTCACTTGTTTTTCCCAAGGGTAATCCTATACCAAGTATCAAGGCACCGACATTCTACAGGTCAGGAACATTTTCCATTGATGTACAATACAGTGATGTGAGTGGGCAACAAACCCTTGCAAAGATCAGCACATATACGATCGGTCCTTTTGATGTTAAGCAAAGCGAAAAGGCAAAAGTTAAAGTGAAAGTTCGTTTGAATGTGCATGGAATTGTTTCTGTTGACCTGGCAACTCTCCTCGAAGAGGAAGAAGTTGAGGCTTCAGTTTCCAGAGAATGGATGTTGATTTACAATGGATGTTTTCCCATTTTGTGTTTGAATGGCATTTTTTGA 1386 0.4228 MMNPKNSVSQIKRLIGKKFSDESLPFSVSEGPDGCPLIHARYLGEVKTFTPTQVFAMMLSNMKEIATKNLNDAVHDCCIAIPVYFTDLQRRAVLHPLRLLHETTATALAYGIYKTDLSETDPLNVAFVDIGHATMQVCIAGFKKGQLKVVAHLFDRSLGGRDFDEVLFHHFAGKFKEEYKIDVLQNARACLRLRAACEKMKKMLSANFVVLLNIECLMDEKDVKGIMKRDEFEEPSLPILERVKGPLEKALAVADAGLSVDDIHIVEVVGSGSRVPAINKILTEFFKKEPRRTMNASECVAKGAALQCAILSPTFKVREFQVNESFPFSISLAWKGSGLDAQDSVPDNQLNSLVFPKGNPIPSIKAPTFYRSGTFSIDVQYSDVSGQQTLAKISTYTIGPFDVKQSEKAKVKVKVRLNVHGIVSVDLATLLEEEEVEASVSREWMLIYNGCFPILCLNGIF 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03993 461 Gene3D - 115 291 - -
Trre3g03993 461 FunFam Heat shock 70 kDa protein 4 159 242 - -
Trre3g03993 461 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 315 437 IPR029047 -
Trre3g03993 461 FunFam Heat shock protein ssb1 9 57 - -
Trre3g03993 461 SUPERFAMILY Actin-like ATPase domain 2 114 IPR043129 -
Trre3g03993 461 PRINTS 70kDa heat shock protein signature 263 279 - -
Trre3g03993 461 PRINTS 70kDa heat shock protein signature 77 97 - -
Trre3g03993 461 PRINTS 70kDa heat shock protein signature 408 424 - -
Trre3g03993 461 PRINTS 70kDa heat shock protein signature 294 314 - -
Trre3g03993 461 Gene3D Actin; Chain A, domain 4 159 242 - -
Trre3g03993 461 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 318 444 IPR029047 -
Trre3g03993 461 PANTHER HSC70CB, ISOFORM G-RELATED 1 436 - -
Trre3g03993 461 Gene3D - 51 305 - -
Trre3g03993 461 SUPERFAMILY Actin-like ATPase domain 124 311 IPR043129 -
Trre3g03993 461 Gene3D - 2 50 - -
Trre3g03993 461 FunFam Heat shock 70 kDa protein 4 10 133 - -
Trre3g03993 461 Pfam Hsp70 protein 2 441 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03993 Trre-Chr3 51145156 51147028 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03993 2 369 Calmodulin-binding Proteins AT1G16030 34.715 1.02e-64 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03993 K09489 - gmx:100780156 689.878