Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03974 ATGTACACATCAAGGAAGAAAATCAGCAAAGATAAGGGTGCTGAGCCAACTGAATTTGAGGAATTGGTTGCACAGGCTTTGTTCGATCTAGAAAACACAAACCATGATTTGAAAAGTGAGCTGAAGGATTTATATATAAATTCAGCAGTCCAAATTGATGTTTCTGGCAACCGCAAGGCTGTGCTTATCAATGTCCCCTACAGATTGAGGAAGGTTTACCGCAAAATTCATACCAAGCTTGTTAGGGAGCTTGAGAAGAAATTTAGCGGCAAGGATGTGATCCTGATTGCCACCAGGAGGATTGTAAGGCCTCCAAAGAAAGGTTCCGCTGCTCAGCGCCCCCGCAGCCGCACACTCACCGCTGTGCACGAGGCAATTCTGGAGGATGTCGTATTACCTGCTGAGATTGTCGGAAAGCGTATTAGATACAGAGTTGATGGATCAAAGGTCATGAAGGTGTTCTTGGACCCAAAGGAGAAGAACAACACTGAATATAAGTTGGAGACATTTTCTGCAGTTTACAGAAAACTCTCAGGCAAAGATGTTGTTTTTGAGTATCCTGTTACTGAGGCTTAG 576 0.4392 MYTSRKKISKDKGAEPTEFEELVAQALFDLENTNHDLKSELKDLYINSAVQIDVSGNRKAVLINVPYRLRKVYRKIHTKLVRELEKKFSGKDVILIATRRIVRPPKKGSAAQRPRSRTLTAVHEAILEDVVLPAEIVGKRIRYRVDGSKVMKVFLDPKEKNNTEYKLETFSAVYRKLSGKDVVFEYPVTEA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03974 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
Trre3g03974 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Trre3g03974 191 Coils Coil 27 47 - -
Trre3g03974 191 PANTHER 40S RIBOSOMAL PROTEIN S7 1 190 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03974 Trre-Chr3 50987842 50989164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03974 1 191 Cytoplasmic Ribosomal Protein Gene Family AT1G48830 78.534 1.32e-114 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03974 K02993 - fve:101291712 340.502