Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03940 ATGGCAAAGGCAAGGGATAGGACTGAGGACTTCAAAGATGCCGTGCGCCAAAGTGCTCGCTCTTTGGGGTATGATGAGGCTAAATTGGCATCCATTTTGGCATCTTTTATTATTCATAAACCTCCACAAAGGTCCCCATTCACCAAAGCTGCATATAAGACGCTCGAGAGTATTGGAGAATTGGACCATTTTTTGTTAAAGCATAGAAAGGACTATACAGATCTACACCGAACAACAGAACATGAGAGAGATAGCATTGAGAATGAAGTTAGTGCTTTTATTAAAACTTGCCAGGAACAAATTGACGTTCTTAAGAATAGTATAAACAATGAAGAGGAAATCTCAAAAGGTTGGCTTGGCATCACCACTGCAAAGGCTAATGCCGACACCATTGCCCACAAACATGGGGTGGTTTTAATTTTAAGTGAGAGGCTTCATTCAGTTACGGCACAGTTTGATCAACTCAGAGCTATACGCTTCCAGGATGCTATTAATAGGGCAATACCACGAAGAAAACTTAATCGTGTAACCAGGAAAGAATCTACCGAAACCTCTAATTCAGGTGATGTGGAGCTCAGAGAACCAGATGAGTTGCGCAGTGAGCCTCTAAGAGTCCAACAGCAACTCTTGGATGATGAAACACGTGCCCTTCAGGTGGAATTGTCTAGTCTTCTAGACACAGTTCAAGAAACTGAAACAAAGATGGTAGAAATGTCTGCATTAAATCACTTGATGGCTACACATGTTTTGCAACAAGCTCAACAAATTGAGCATCTGTATGACCAGGCCGTTGAAGCTACCAAGAATGTTGAGCTTGGTAACAAAGAACTCTCACAAGCCATTCAACGGAATAGCAGCAGCAGAACATTTCTTTTACTATTTCTGTTTGTGCTCACTTTTTCCATCATCTTTCTTGATTGGTATAGTTAA 930 0.4118 MAKARDRTEDFKDAVRQSARSLGYDEAKLASILASFIIHKPPQRSPFTKAAYKTLESIGELDHFLLKHRKDYTDLHRTTEHERDSIENEVSAFIKTCQEQIDVLKNSINNEEEISKGWLGITTAKANADTIAHKHGVVLILSERLHSVTAQFDQLRAIRFQDAINRAIPRRKLNRVTRKESTETSNSGDVELREPDELRSEPLRVQQQLLDDETRALQVELSSLLDTVQETETKMVEMSALNHLMATHVLQQAQQIEHLYDQAVEATKNVELGNKELSQAIQRNSSSRTFLLLFLFVLTFSIIFLDWYS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03940 309 FunFam Syntaxin-81 like 212 306 - -
Trre3g03940 309 Gene3D - 211 306 - -
Trre3g03940 309 MobiDBLite consensus disorder prediction 175 198 - -
Trre3g03940 309 PANTHER SYNTAXIN-18 1 309 - -
Trre3g03940 309 Coils Coil 94 114 - -
Trre3g03940 309 SUPERFAMILY t-snare proteins 56 273 IPR010989 GO:0016020|GO:0016192
Trre3g03940 309 Pfam SNARE-complex protein Syntaxin-18 N-terminus 6 86 IPR019529 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03940 Trre-Chr3 50465489 50470999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03940 65 309 SNARE and Associated Proteins AT1G51740 75.610 1.19e-116 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03940 K08492 - gmx:100778011 539.265