Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03930 ATGAATAATACACCATTTAACAACCATACTACTGAGCCTAGGGATGTTGCTAGTTCGAGTTCTAATTCCACCGGAATTAACCTACCACCGAGGAAGGTCTTACCAGACTCGAAGTTTCAACGTGTTTTACATACCCCACTTATGACAGAACCGCCCGGCACATCAATAAATCAAGTAGGTAATAAGTTTTACGAGGCGTTTCAACAAAAACATGGAAGTTATGCTGATCTTCCTGCTGCCAAAATTACAGAACTAATGAAATCATCTAGTTTGGATAATGCTCCTACTCAATCACTTTTGAGTGTTGTGAATGGTATCTTAGAAGAAAGTGTTGAAAGAAGAAATGGAGAAATACCCCTTCGTGTGGCTTGCTTGTTAAGAAAAGTTGTCCAGGAGATTGAGCGGCGTATATCAACGCAGCAAGAACATTTAAGAACGCAAAACAATCTTTTTAAGACTCGCGAAGAAAAATATAAATCAAGAATATCAGTACTTGAGGCTCTTGCATCAGGAACAAAGGAAGAGAGTAAGCTTGTTCTTACAAGTCAACTTCAACAGTTGAAGAATGAGAATATCATAAAGGAAGAAAAAAATGCACATCATGACTCGAAACCGCCAATTGAGAAGATTGTCAAGGAAGAAACGAAATCAAATGACTCGATAAATGCCGATAAGATTAAAGAGGAGGAAGAAAAGAAAGAAATTGATAAAGAAGTTATTAGATTGATTAAAGAAGTGGAAGATAAAAATTTGGAAAAAGAGGAAATTGATAAAGAAGTTAGTAGATTGATTAAAGAGGTGGATGGCAAAAACATAAAAATTTCGACATTGGAGCAAGACTTAGAAACAATTCAAAAAAGATATGAAGTACAATGCTCAAAGATGGATTCAGAAGCTAAGGATGAAATCGATAAAGAAGTTATTCGATTGAATAAAGAGATCGAGGATAAAAATATGGAAATTTCGACATTGAAGCAAGACTTAGAAACAATCCAAAAAAGATATGAAGTACAATGCTCAAAGATGGAATCAGAAGCTAAGAATGAAATGGATAAAGAAGTTATTAGATTGAATAAAGAAATGGAAGACAAAAATACGGAAATTTCGAAATTGAAGCAAGACTTAGAAACAATTAAAAAAAGTTATGAAGTACAATGCTCAAAGTTGGAATCAGAAGTTAAGGATGCTAAAGGAGAATTGAAACAGAAATCACAAGAATATGAGGATTTATTGGAAAAGTTAAGAAAAAAGCTTCAAGAGAGTGAAACTTTGACTAAGTTAAAATATGAGAAGTGGAATATGAAACAAAACCTAATGCAGAAAGCTATGAATTTTCAATTTGGTTCTATACAGCAATTGAAATTGTCTTGGGAATCCATTAAGCAAGATGTTATGAAAGAGCAAACAATTTACTCAGAGGAATGCAAAAGATTTGGTGTAAATCTTAAACCACTAGTTCATGCAGCTGAGAATTATCATACAATTCTTGCAGAAAATAGAAAATTATTTAATGAACTTCAAGAATTAAAAGGAAATATTAGAGTATATTGTAGAATTAGACCATTTGGACCTGGCCAAAAAGAAAAACAATCTATTGTTGAAAGAATTGGTGAATCAGAGTTGGTTGTATCAAATCCAAGCAAAAAAGAAGCACTCAAAACATTTAAGTTTAATAAGATCTTTGGTCCTACCTCATCTCAAGCTGAGGTATATGAAGACATACAAGCCTTTATAAGATCAGTACTTGATGGTTATAATGTTTGTATATTTGCTTATGGTCAAACAGGTTCAGGAAAAACTTATACAATGAGTGGTCCAAACAATGCAACCGGTGAGAGTGTTGGTGTTAACTATAGAGCTCTAAATGACCTCTTCAACATATCAGCAAGCAGACAAAGCTCCATAGTTTATGAAATTGGAGTTCAAATTATTGAAATATATAACGAACAAGTGCGAGATTTGTTATCAACTGATACAGCTGTCAAAAAATATCCTTTTTGTTTTTCAGTTGATACATACATACCTGATGCTAGTATGCACCCTGTTAAATCAACTGCTGATGTCATAAAGCTAATGGACATTGGTTTGAAAAATAGAGCAAAGAGTTCTACTGCTATGAATGAAAGAAGTAGTCGTTCTCACAGTGTGGTTTCGATACATGTTCGTGGAGCGGATAAGAAATCCGGTTCGACTCTACAAGGTAATCTTCATTTGGTAGATTTGGCAGGAAGTGAAAGGATAGATCGGTCTGAAGTAACCGGTGATAGATTAAAGGAAGCACAACATATTAACAAATCATTGTCTGCTCTTGGAGATGTCATTTTTGCCCTTGCTCAAAAGAGTTCTCATATACCATATAGAAACAGCAAGCTCACACAAATTCTGCAAACCGCTCTCGGTGGTCATGCAAAGACACTCATGTTAGTCCAAATTACTTCAGACATAAAGTCTTATTCCGAATCTTTGAGTACTTTGAAGTTTGCTGAGAGGGTTTCTGGAGTTGAGTTAGGAGTTGCAAAAAGTTCAAAAGATGGAAGAGATGTTAGAGAATTAATGGAACAGGTGGCTTCTCTCAAAGATACGATTTCGACAAAAGATGAAGAAATTGAGCGACTACAATTACTTAAGGATCTAAAAAATGTTAATTCTGATAAGCTTGAAGATTAA 2667 0.3435 MNNTPFNNHTTEPRDVASSSSNSTGINLPPRKVLPDSKFQRVLHTPLMTEPPGTSINQVGNKFYEAFQQKHGSYADLPAAKITELMKSSSLDNAPTQSLLSVVNGILEESVERRNGEIPLRVACLLRKVVQEIERRISTQQEHLRTQNNLFKTREEKYKSRISVLEALASGTKEESKLVLTSQLQQLKNENIIKEEKNAHHDSKPPIEKIVKEETKSNDSINADKIKEEEEKKEIDKEVIRLIKEVEDKNLEKEEIDKEVSRLIKEVDGKNIKISTLEQDLETIQKRYEVQCSKMDSEAKDEIDKEVIRLNKEIEDKNMEISTLKQDLETIQKRYEVQCSKMESEAKNEMDKEVIRLNKEMEDKNTEISKLKQDLETIKKSYEVQCSKLESEVKDAKGELKQKSQEYEDLLEKLRKKLQESETLTKLKYEKWNMKQNLMQKAMNFQFGSIQQLKLSWESIKQDVMKEQTIYSEECKRFGVNLKPLVHAAENYHTILAENRKLFNELQELKGNIRVYCRIRPFGPGQKEKQSIVERIGESELVVSNPSKKEALKTFKFNKIFGPTSSQAEVYEDIQAFIRSVLDGYNVCIFAYGQTGSGKTYTMSGPNNATGESVGVNYRALNDLFNISASRQSSIVYEIGVQIIEIYNEQVRDLLSTDTAVKKYPFCFSVDTYIPDASMHPVKSTADVIKLMDIGLKNRAKSSTAMNERSSRSHSVVSIHVRGADKKSGSTLQGNLHLVDLAGSERIDRSEVTGDRLKEAQHINKSLSALGDVIFALAQKSSHIPYRNSKLTQILQTALGGHAKTLMLVQITSDIKSYSESLSTLKFAERVSGVELGVAKSSKDGRDVRELMEQVASLKDTISTKDEEIERLQLLKDLKNVNSDKLED 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03930 888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 512 872 IPR027417 -
Trre3g03930 888 ProSiteProfiles Kinesin motor domain profile. 512 834 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre3g03930 888 PRINTS Kinesin heavy chain signature 784 805 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre3g03930 888 PRINTS Kinesin heavy chain signature 704 721 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre3g03930 888 PRINTS Kinesin heavy chain signature 584 605 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre3g03930 888 PRINTS Kinesin heavy chain signature 735 753 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre3g03930 888 Pfam Kinesin motor domain 518 832 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre3g03930 888 Coils Coil 218 287 - -
Trre3g03930 888 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein with CH (Calponin Homology) domain 454 664 - -
Trre3g03930 888 Coils Coil 848 875 - -
Trre3g03930 888 MobiDBLite consensus disorder prediction 1 32 - -
Trre3g03930 888 Coils Coil 347 427 - -
Trre3g03930 888 Coils Coil 300 345 - -
Trre3g03930 888 Gene3D - 255 296 - -
Trre3g03930 888 Gene3D - 302 343 - -
Trre3g03930 888 Gene3D - 348 390 - -
Trre3g03930 888 SMART kinesin_4 510 842 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre3g03930 888 PANTHER KINESIN-LIKE PROTEIN KLP-3 357 870 IPR027640 GO:0003777|GO:0007018
Trre3g03930 888 FunFam Kinesin-related protein3 671 876 - -
Trre3g03930 888 Gene3D Kinesin motor domain 454 836 IPR036961 -
Trre3g03930 888 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03930 Trre-Chr3 50377706 50383628 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03930 244 885 Calmodulin-binding Proteins AT5G65930 30.240 1.27e-68 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03930 K10406 - gmx:100779403 1145.57