Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03928 ATGAATAATACACCATTTAACAACCATACTACTGAGCCTAGGGATGTTGCTAGTTCGAGTTCTAATTCCACCGGAATTAACCTACCACCGAGGAAGGTCTTACCAGACTCGAAGTTTCAACGTGTTTTACATACCCCACTTATGACAGAACCGCCCGGCACATCAATAAATCAAGTAGGTAATAAGTTTTACGAGGCGTTTCAACAAAAACATGGAAGTTATGCTGATCTTCCTGCTGCCAAAATTACAGAACTAATGAAATCATCTAGTTTGGATAATGCTCCTACTCAATCACTTTTGAGTGTTGTGAATGGTATCTTAGAAGAAAGTGTTGAAAGAAGAAATGGAGAAATACCCCTTCGTGTGGCTTGCTTGTTAAGAAAAGTTGTCCAGGAGATTGAGCGGCGTATATCAACGCAGCAAGAACATTTAAGAACGCAAAACAATCTTTTTAAGACTCGCGAAGAAAAATATAAATCAAGAATATCAGTACTTGAGGCTCTTGCATCAGGAACAAAGGAAGAGAGTAAGCTTGTTCTTACAAGTCAACTTCAACAGTTGAAGAATGAGAATATCATAAAGGAAGAAAAAAATGCACATCATGACTCGAAACCGCCAATTGAGAAGATTGTCAAGGAAGAAACGAAATCAAATGACTCGATAAATGCCGATAAGATTAAAGAGGAGGAAGAAAAGAAAGAAATTGATAAAGAAGTTATTAGATTGATTAAAGAAGTGGAAGATAAAAATTTGGAAAAAGAGGAAATTGATAAAGAAGTTAGTAGATTGATTAAAGAGGTGGATGGCAAAAACATAAAAATTTCGACATTGGAGCAAGACTTAGAAACAATTCAAAAAAGATATGAAGTACAATGCTCAAAGATGGATTCAGAAGCTAAGGATGAAATCGATAAAGAAGTTATTCGATTGAATAAAGAGATCGAGGATAAAAATATGGAAATTTCGACATTGAAGCAAGACTTAGAAACAATCCAAAAAAGATATGAAGTACAATGCTCAAAGATGGAATCAGAAGCTAAGAATGAAATGGATAAAGAAGTTATTAGATTGAATAAAGAAATGGAAGACAAAAATACGGAAATTTCGAAATTGAAGCAAGACTTAGAAACAATTAAAAAAAGTTATGAAGTACAATGCTCAAAGTTGGAATCAGAAGTTAAGGATGCTAAAGGAGAATTGAAACAGAAATCACAAGAATATGAGGATTTATTGGAAAAGTTAAGAAAAAAGCTTCAAGAGAGTGAAACTTTGACTAAGTTAAAATATGAGAAGTGGAATATGAAACAAAACCTAATGCAGAAAGCTATGAATTTTCAATTTGGTTCTATACAGCAATTGAAATTGTCTTGGGAATCCATTAAGCAAGATGTTATGAAAGAGCAAACAATTTACTCAGAGGAATGCAAAAGATTTGGTGTAAATCTTAAACCACTAGTTCATGCAGCTGAGAATTATCATACAATTCTTGCAGAAAATAGAAAATTATTTAATGAACTTCAAGAATTAAAAGGAAATATTAGAGTATATTGTAGAATTAGACCATTTGGACCTGGCCAAAAAGAAAAACAATCTATTGTTGAAAGAATTGGTGAATCAGAGTTGGTTGTATCAAATCCAAGCAAAAAAGAAGCACTCAAAACATTTAAGTTTAATAAGATCTTTGGTCCTACCTCATCTCAAGCTGAGGTATATGAAGACATACAAGCCTTTATAAGATCAGTACTTGATGGTTATAATGTTTGTATATTTGCTTATGGTCAAACAGGTTCAGGAAAAACTTATACAATGAGTGGTCCAAACAATGCAACCGTACCTGATGCTAGTATGCACCCTGTTAAATCAACTGCTGATGTCATAAAGCTAATGGACATTGGTTTGAAAAATAGAGCAAAGAGTTCTACTGCTATGAATGAAAGAAGTAGTCGTTCTCACAGTGTGGTTTCGATACATGTTCGTGGAGCGGATAAGAAATCCGGTTCGACTCTACAAGGTAATCTTCATTTGGTAGATTTGGCAGGAAGTGAAAGGATAGATCGGTCTGAAGTAACCGGTGATAGATTAAAGGAAGCACAACATATTAACAAATCATTGTCTGCTCTTGGAGATGTCATTTTTGCCCTTGCTCAAAAGAGTTCTCATATACCATATAGAAACAGCAAGCTCACACAAATTCTGCAAACCGCTCTCGGTGGTCATGCAAAGACACTCATGTTAGTCCAAATTACTTCAGACATAAAGTCTTATTCCGAATCTTTGAGTACTTTGAAGTTTGCTGAGAGGGTTTCTGGAGTTGAGTTAGGAGTTGCAAAAAGTTCAAAAGATGGAAGAGATGTTAGAGAATTAATGGAACAGGTGGCTTCTCTCAAAGATACGATTTCGACAAAAGATGAAGAAATTGAGCGACTACAATTACTTAAGGATCTAAAAAATGTTAATTCTGATAAGCTTGAAGATTAA 2478 0.3446 MNNTPFNNHTTEPRDVASSSSNSTGINLPPRKVLPDSKFQRVLHTPLMTEPPGTSINQVGNKFYEAFQQKHGSYADLPAAKITELMKSSSLDNAPTQSLLSVVNGILEESVERRNGEIPLRVACLLRKVVQEIERRISTQQEHLRTQNNLFKTREEKYKSRISVLEALASGTKEESKLVLTSQLQQLKNENIIKEEKNAHHDSKPPIEKIVKEETKSNDSINADKIKEEEEKKEIDKEVIRLIKEVEDKNLEKEEIDKEVSRLIKEVDGKNIKISTLEQDLETIQKRYEVQCSKMDSEAKDEIDKEVIRLNKEIEDKNMEISTLKQDLETIQKRYEVQCSKMESEAKNEMDKEVIRLNKEMEDKNTEISKLKQDLETIKKSYEVQCSKLESEVKDAKGELKQKSQEYEDLLEKLRKKLQESETLTKLKYEKWNMKQNLMQKAMNFQFGSIQQLKLSWESIKQDVMKEQTIYSEECKRFGVNLKPLVHAAENYHTILAENRKLFNELQELKGNIRVYCRIRPFGPGQKEKQSIVERIGESELVVSNPSKKEALKTFKFNKIFGPTSSQAEVYEDIQAFIRSVLDGYNVCIFAYGQTGSGKTYTMSGPNNATVPDASMHPVKSTADVIKLMDIGLKNRAKSSTAMNERSSRSHSVVSIHVRGADKKSGSTLQGNLHLVDLAGSERIDRSEVTGDRLKEAQHINKSLSALGDVIFALAQKSSHIPYRNSKLTQILQTALGGHAKTLMLVQITSDIKSYSESLSTLKFAERVSGVELGVAKSSKDGRDVRELMEQVASLKDTISTKDEEIERLQLLKDLKNVNSDKLED 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03928 825 Gene3D - 302 343 - -
Trre3g03928 825 Gene3D - 255 296 - -
Trre3g03928 825 Gene3D - 348 390 - -
Trre3g03928 825 SMART kinesin_4 510 779 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre3g03928 825 Coils Coil 218 287 - -
Trre3g03928 825 PRINTS Kinesin heavy chain signature 584 605 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre3g03928 825 PRINTS Kinesin heavy chain signature 721 742 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre3g03928 825 MobiDBLite consensus disorder prediction 1 32 - -
Trre3g03928 825 Coils Coil 347 427 - -
Trre3g03928 825 Coils Coil 300 345 - -
Trre3g03928 825 Gene3D Kinesin motor domain 454 608 IPR036961 -
Trre3g03928 825 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 512 809 IPR027417 -
Trre3g03928 825 Gene3D Kinesin motor domain 609 813 IPR036961 -
Trre3g03928 825 Pfam Kinesin motor domain 518 607 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre3g03928 825 Pfam Kinesin motor domain 609 769 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre3g03928 825 PANTHER KINESIN-LIKE PROTEIN KLP-3 37 193 IPR027640 GO:0003777|GO:0007018
Trre3g03928 825 Coils Coil 785 812 - -
Trre3g03928 825 MobiDBLite consensus disorder prediction 1 28 - -
Trre3g03928 825 FunFam Kinesin-related protein3 608 813 - -
Trre3g03928 825 ProSiteProfiles Kinesin motor domain profile. 512 771 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03928 Trre-Chr3 50377706 50383628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03928 244 822 Calmodulin-binding Proteins AT5G65930 26.165 3.28e-37 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03928 K10406 - gmx:100779403 919.457