Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03912 ATGAATATGATGCAAAATTTGATGCCTTTTTCTTGTGACAACATCTTGGAACATCATCAACAACAGGAACATGAGTTGTTTCCAAGAAACTTGGAAGAAAATTTTCATGGTCTTGTTCATCATCATCATCATCATCATGTTAATAATCATAGTCACAATGCAGTTCAAGTTTCATTTCCAAATTTTCAAGAAGAAAATAAAGTTCATCATGAAGGAAAAAAGAGAAAAATTATGGATTTTCAAGAGACTAGTTCTGCAAATTCAACTCCTGCAGTTTCTGAGAGTGGAAGCAAAACCAAACATAGTGGTGGAAGAGGAAAAAGAGTGAAAAGCTATGAAACAGAAGATCAAGAGAAAGCAAAGGAAGTTGTTCATGTTAGAGCAAGAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATTAATGAGAAATTGAGGTGCTTGCAGAATATTGTTCCTGGATGTTACAAGACCATGGGAATGGCAGTAATGTTGGATGAAATCATAAACTATGTTCAGTCTTTGCAGCATCAAGTAGAGTTTCTTTCTTTGAAACTTACTGCAGCAAGCACTTATTATGACTTCAATTCAGAGACAGATGATTTAGAAACAATGCAGAGAGCAAGGGCATCTGAGGCAAAAGAATTAGCAAGGTATAAGAAAGAAGAATATGGAGGATTTTCATGCTTTCAACCAACATGGCCCCTTTGA 732 0.3579 MNMMQNLMPFSCDNILEHHQQQEHELFPRNLEENFHGLVHHHHHHHVNNHSHNAVQVSFPNFQEENKVHHEGKKRKIMDFQETSSANSTPAVSESGSKTKHSGGRGKRVKSYETEDQEKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTYYDFNSETDDLETMQRARASEAKELARYKKEEYGGFSCFQPTWPL 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03912 243 SMART finulus 138 188 IPR011598 GO:0046983
Trre3g03912 243 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 54 206 IPR024097 GO:0006355
Trre3g03912 243 FunFam transcription factor BEE 3-like 129 200 - -
Trre3g03912 243 Pfam Helix-loop-helix DNA-binding domain 136 183 IPR011598 GO:0046983
Trre3g03912 243 Gene3D - 129 200 IPR036638 GO:0046983
Trre3g03912 243 MobiDBLite consensus disorder prediction 106 138 - -
Trre3g03912 243 CDD bHLH_AtBPE_like 122 207 - -
Trre3g03912 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 199 IPR036638 GO:0046983
Trre3g03912 243 MobiDBLite consensus disorder prediction 81 99 - -
Trre3g03912 243 Coils Coil 209 229 - -
Trre3g03912 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 182 IPR011598 GO:0046983
Trre3g03912 243 MobiDBLite consensus disorder prediction 79 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03912 Trre-Chr3 50209075 50211040 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03912 9 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 50.593 3.99e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre3g03912 HLH 0.00015 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03912 - - gmx:100806942 346.28