Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03911 ATGGCTGAATTCACTGAAAATTTTCAAAATATTATTAGACCCTCTTTTCCTTTTATTGATTCTGATCAAAGCATGGAAATTTTGAATCAATTCATGGAAAATTCAAACATGAATATGATGCAAAATTTGATGCCTTTTTCTTGTGACAACATCTTGGAACATCATCAACAACAGGAACATGAGTTGTTTCCAAGAAACTTGGAAGAAAATTTTCATGGTCTTGTTCATCATCATCATCATCATCATGTTAATAATCATAGTCACAATGCAGTTCAAGTTTCATTTCCAAATTTTCAAGAAGAAAATAAAGTTCATCATGAAGGAAAAAAGAGAAAAATTATGGATTTTCAAGAGACTAGTTCTGCAAATTCAACTCCTGCAGTTTCTGAGAGTGGAAGCAAAACCAAACATAGTGGTGGAAGAGGAAAAAGAGTGAAAAGCTATGAAACAGAAGATCAAGAGAAAGCAAAGGAAGTTGTTCATGTTAGAGCAAGAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATTAATGAGAAATTGAGGTGCTTGCAGAATATTGTTCCTGGATGTTACAAGACCATGGGAATGGCAGTAATGTTGGATGAAATCATAAACTATGTTCAGTCTTTGCAGCATCAAGTAGAGTTTCTTTCTTTGAAACTTACTGCAGCAAGCACTTATTATGACTTCAATTCAGAGACAGATGATTTAGAAACAATGCAGAGAGCAAGGGCATCTGAGGCAAAAGAATTAGCAAGGTATAAGAAAGAAGAATATGGAGGATTTTCATGCTTTCAACCAACATGGCCCCTTTGA 840 0.3476 MAEFTENFQNIIRPSFPFIDSDQSMEILNQFMENSNMNMMQNLMPFSCDNILEHHQQQEHELFPRNLEENFHGLVHHHHHHHVNNHSHNAVQVSFPNFQEENKVHHEGKKRKIMDFQETSSANSTPAVSESGSKTKHSGGRGKRVKSYETEDQEKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTYYDFNSETDDLETMQRARASEAKELARYKKEEYGGFSCFQPTWPL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03911 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 218 IPR011598 GO:0046983
Trre3g03911 279 MobiDBLite consensus disorder prediction 115 174 - -
Trre3g03911 279 FunFam transcription factor BEE 3-like 165 236 - -
Trre3g03911 279 SMART finulus 174 224 IPR011598 GO:0046983
Trre3g03911 279 Pfam Helix-loop-helix DNA-binding domain 172 219 IPR011598 GO:0046983
Trre3g03911 279 MobiDBLite consensus disorder prediction 117 135 - -
Trre3g03911 279 CDD bHLH_AtBPE_like 158 243 - -
Trre3g03911 279 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 66 242 IPR024097 GO:0006355
Trre3g03911 279 MobiDBLite consensus disorder prediction 142 174 - -
Trre3g03911 279 Gene3D - 168 230 IPR036638 GO:0046983
Trre3g03911 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 235 IPR036638 GO:0046983
Trre3g03911 279 Coils Coil 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03911 Trre-Chr3 50208967 50211040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03911 45 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 52.174 2.82e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre3g03911 HLH 0.00018 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03911 - - gmx:100806942 389.808