Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03905 ATGTTCTTCTCCAAATTCTTCTCCTGTTTTCAGATGTGTCTGAAAAAGCACGGCACTGTCTCCGATGACAACGACGACGACAAAGATACCATCGACGCCGTTGATTCTTCTTCAAATCTGTTATTCGAACTTCATACTCTTCAGCTTGCAACCAATTTCTTCTCTGAACTTAACCAACTTGGTCGTGGAGGTTTTGGTCCTGTTTTCAAGGGATTGATGCCAAATGGTGAAGAAGTGGCAATTAAAAAGCTGTCATTGGAATCTAGACAAGGAATTCGAGAGTTTATGAACGAAGTTCGGCTATTACTAAGAATTCAGCACAAGAATTTAGTCACTTTACTAGGTTGTTGTGCAGAAGGACCAGAAAAGATGCTTGTCTATGAATATCTACCAAACAAAAGCCTTGACCATTTTCTATTTGATAAAAAGAGGTCCTTGGATTGGACGACACGATTTAAAATAATTACCGGTGTGGCAAGAGGACTTCTCTACCTGCACGAAGAGGCCCCGGAAAGAATTATTCATAGAGACATTAAAGCTAGTAACATATTGCTAGACGAGAAATTAAATCCGAAAATTTCAGACTTTGGTTTGGCAAGACTGTTTCCTGGAGAGGATACTCATGTGCAGACATTTAGGATTTCCGGTACACATGGTTACATGGCTCCTGAATATGCAATGCGTGGATATCTTTCTGTAAAGACCGATGTTTTCAGCTATGGAGTGTTGGTGTTGGAAATAGTTAGCGGGAGAAAAAACCACGATGTGAAGCTTGGTTCAGAAAAGGCAGATCTCCTAAGCTATGCATGGAAGCTTTATCAAGGAGGGAAAATTATGGATTTAATAGACCAAAGCATAGGTAAATACAACGGCGACGAGGCGGCAATGTGCATTCAGCTAGGTTTACTATGTTGTCAAGCAAGTATAGTAGAAAGACCTGACATGAATTCAGTTCATCTTATGCTATCAAGTGATTCATTCACATTGCCAAGACCAAGTAAACCAGGAATTCAGGGTCGTGTAGGAAATTGGAATACAACTAGTACTTCTGCTTTGACAAATACTAATGCTAGTAGTGCAACAAGAGCTTCAGGTGGTAGTAGTTTTGTAGAGGATTATTCTAGAAATTCTATTTCTACTTCTTCTTTTGATGAAGGTAGATAG 1164 0.396 MFFSKFFSCFQMCLKKHGTVSDDNDDDKDTIDAVDSSSNLLFELHTLQLATNFFSELNQLGRGGFGPVFKGLMPNGEEVAIKKLSLESRQGIREFMNEVRLLLRIQHKNLVTLLGCCAEGPEKMLVYEYLPNKSLDHFLFDKKRSLDWTTRFKIITGVARGLLYLHEEAPERIIHRDIKASNILLDEKLNPKISDFGLARLFPGEDTHVQTFRISGTHGYMAPEYAMRGYLSVKTDVFSYGVLVLEIVSGRKNHDVKLGSEKADLLSYAWKLYQGGKIMDLIDQSIGKYNGDEAAMCIQLGLLCCQASIVERPDMNSVHLMLSSDSFTLPRPSKPGIQGRVGNWNTTSTSALTNTNASSATRASGGSSFVEDYSRNSISTSSFDEGR 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03905 387 FunFam Cysteine-rich receptor-like protein kinase 41 130 328 - -
Trre3g03905 387 ProSiteProfiles Protein kinase domain profile. 54 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03905 387 MobiDBLite consensus disorder prediction 352 387 - -
Trre3g03905 387 Pfam Protein tyrosine and serine/threonine kinase 57 263 IPR001245 GO:0004672|GO:0006468
Trre3g03905 387 Gene3D Phosphorylase Kinase; domain 1 16 129 - -
Trre3g03905 387 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 6 381 - -
Trre3g03905 387 SMART serkin_6 54 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03905 387 CDD STKc_IRAK 60 322 - -
Trre3g03905 387 Gene3D Transferase(Phosphotransferase) domain 1 130 328 - -
Trre3g03905 387 FunFam Cysteine-rich receptor-like protein kinase 2 21 129 - -
Trre3g03905 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Trre3g03905 387 SUPERFAMILY Protein kinase-like (PK-like) 42 335 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03905 Trre-Chr3 50164533 50168062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03905 9 358 Receptor kinase-like Gene Family AT4G23150 48.459 2.41e-111 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre3g03905 PK_Tyr_Ser-Thr 6.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03905 - - tpra:123884781 724.161