Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03898 ATGGCGACGCCGTTAATCCCGCAGCAGCTCTTAGACGGCGGTGGAGGAGTAGCGGTTCTGTCGAATCTCGTTCCTTCTTCCTCTTCTTCTACCTCCTCCAATGGTGGTGGTGGATTCAACCGGTCCTCTTTATCGGAATCGCCAATTTTGATTTTCTCGTTCTTCCAAAAAGCGATTCGGAACGAGCTTGATGCGTTGCACAGATTAGCTTTGGCTTTTGCTACTGGAAACCGTTCCGATATTCAACCTCTCTCTGAACGCTACCATTTTCTTAGATCGATGTATAAACACCATTCCAATGCTGAAGATGAGGTGATTTTTCCAGCTCTAGATAAACGTGTGAAGAATGTAGCACAGACATATTCGCTTGAACACAAGGGTGAAAGCAATCTGTTTGACCATTTATTTGAGCTTTTAAACTCTCCCGATGATAACGATGAAAGTTTCCGAAGGGAGTTAGCATCCTGCACTGGTGCTTTGCAGACATCTGTTAGTCAACACATGGCTAAGGAGCAGCAGCAAGTGTTTCCCCTTCTTATTGAGAAGTTCTCACTGGAGGAACAAGCATCTTTAGTTTGGCAATTTCTTTGCAGTATTCCAGTGAATATGATGGCCGAATTTCTTCCATGGCTTTCCACATCCATATCACCCGATGAATCTCAGGATTTACGGATGTGCTTAAGCAAGATAGTGCCAGAAGAAAAGCTTCTTCAAAAGGTTATTTTCACCTGGATGGATGGGAGAAGTAGTGCTAACATGGTTGAAAATTGTGTAGATCATTCTCAGGTTCAATGTAATCCTAGTCCTTTAGCCCATCAAATTGGGAAAATAAATTGTGCATGTGAGTCCACTGTATCTGGGAAAAGAAAATATTCTGCAGCTATTCTAGATGTTCCTGAGACAATTGGTTCACATCCTATAGATGAAATATTGCTCTGGCATAATGCTATAAAAAAAGAGTTGAATGAGATTGCAGTGGAGACCAGAAAGATACAACATTCTGGAGATTATACTAATCTGTCTGCTTTTAATGAAAGGCTGCAATTTATTGCTGAAGTTTTCATATTTCACAGCATTGCTGAGGACAAGGTTATTTTTCCGGCAGTAGATGGAGATTTTTCTTTCTTTCAGGAGCACGCTGAAGAAGAAAGTCAATTTAATGACTTCCGATCATTGATTGAAAGAATTCTAAGTGAAGAAGCAACATCTAGTTCAGAAGTTGAACTTTATTCCAAGTTGTGCTCACATGCTGATCATATAATGGAAACCATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCACGGAAGCACTTTAGCTTCCAAAGGCAACGTGAACTAGTGTATCAAAGCTTGTGCATGATGCCTCTGAAATTGATTGAGCGTGTCCTGCCATGGTTTGTTGGATCATTAGCTGAAGTTGAAGCAGAGATATTTCTGAAAAACATACAATTGGCAGCTCCTGCGATCGATTCTGCTTTAGTAACACTCTTCTCTGGTTGGGCTTGCAAGGCTCGTAAAAATGGTCAGTGCTTGTCTTCAAGTGCATCAGGTTTCTGTCCTGCTAAAAAAATTGTCCGGTCTTCCTGTACTTGTCCTTCTGCATTGTCTGGTAAAGGTTGCCCATTATTAGCTGAATCAGATGGGACCCAAAGATCAGTAAAGCGAAACATATTGGAGTTGCACAAAAATGGAGATGCCTCAAAAACACCAGAAAATGAATGTACCCAGAAACCATGCTGTGGTGCTCGGTCTTGTTGTGTGCCAGCTTTAGGGGTCAACAGTAACAATTTGGGGCTGAGTTCACTTTCTGCTGCAAAGTCCTTAAGGAACTTCACTTCTTCCGCCCCATCTCTTAATTCTAGTCTTTTCATATGGGAAACAGACAGCAGCTCATGTGATGTTGGCTCTGCAGAAAGGCCAATTGATACCATATTTAAATTCCATAAAGCTATACGCATAGATCTGGAGTATTTAGATGTTGAATCTGGAAAGCTTTGTGATGGTGATGAAACAACTATTCGGCAATTTACCGGAAGATTTCGTCTTTTGTGGGGTTTATATAGAGCTCACAGTAATGCTGAAGATGATATAGTTTTTCCTGCATTGGAATCCAAAGAGACACTTCATAATGTGAGCCATTCATACACTCTGGACCATAAGGCGGAAGAAAAGTTATTTGAAGATATTTCTTGCGTTCTTTCTGAGCTTTCTGTCCTTCATGAAGCAATGCAGAGGACCCATATGTCAGAGGATTTAAGAGAAAGTAATTTGGGAATATTTGATGCCAATGATAGTGATGATATCAGGAAGTACAATGAGCTTGCAACTAAGCTTCAAGGGATGTTTAAATCTATACGAGTGACCCTTGATCAGCATATTTTCAGGGAAGAGCTCGAGCTCTGGCCATTGTTTGGAAAACATTTCACTGTGGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGAACTACAGGGGCTGAAGTTCTCCAATCAATGTTACCATGGGTGACTTCTGCACTTACACAAGATGAACAGAACAAAATGATGGACACATGGAAACAAGCAACTAAGAATACAATGTTTAATGAATGGCTAAATGAATGCTTGATAGAGAGTCCAGGATCTGCATCACAGACAGAAACATCAGAACGTAGCACTTCTCAAAGAGGTGCTGAATATCAAGAAAGCTTGAACCTGAATGATCAGATGTTTAAGCCGGGTTGGAAAGACATATTCCGGATGAACGAGAATGAAATTGTATCTGAAATCCGGAAGGTTTATCGTGACTCAACCCTTGATCCAAGGAGAAAGGCATATCTAGTGCAGAATCTAATGACAAGTCGCTGGATAGCTGCCCAACAGAAGTTACCTAAATCTCAATCTGGGGAATCATCTAATAAACAAATAGAAGGATACTTACCTTCATTTCGGGACCCAGAGAAACAAGTATTTGGTTGTGAACACTATAAGAGAAATTGCAAAATTCGAGCTGCTTGTTGTGGGAAGTTATTTACGTGCAGATTTTGTCATGACAACAATTCAAGTGATCACTCAATGGATAGAAAAGCAACATTGGAAATGATGTGTATGGCCTGCATGACTATACAGCCAGTTGGTCCCATATGCACGACGCCTTCATGTAATGGACTTTCAATGGCAAAGTACTATTGTAACATTTGCAAATTTTTTGACGATGAAAGGAATGTTTACCATTGTCCATTTTGCAATATATGCCGTGTTGGACAAGGGCTTGGCATTGATTACTTTCATTGTATGAAATGCAATTGTTGCGTGGGGATTAAATCAGTGTCTCACAAGTGCCTGGAGAAGGGCTTAGAAATGAACTGCCCAATTTGCTGCGACGACTTGTTCACATCAAGTGCAACAGTCAGAGCGCTAGCTTGTGGCCATTACATGCATTCATCTTGTTTTCAGGCATACACTTGCAGTCACTACACATGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCATTGTTGGCTGCTGAACAGCTTCCTGAAGAGTACAGGGACCGCTCTCAGGACATACTCTGCCATGACTGTGATCGGAAGGGAACTTCACACTTCCACTGGTTATATCATAAATGTGGATTTTGTGGCTCATACAATACGCGGGTGATCAAGAGCGAGACAACAAATTCCAGCTGCCCTTAA 3714 0.4128 MATPLIPQQLLDGGGGVAVLSNLVPSSSSSTSSNGGGGFNRSSLSESPILIFSFFQKAIRNELDALHRLALAFATGNRSDIQPLSERYHFLRSMYKHHSNAEDEVIFPALDKRVKNVAQTYSLEHKGESNLFDHLFELLNSPDDNDESFRRELASCTGALQTSVSQHMAKEQQQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSTSISPDESQDLRMCLSKIVPEEKLLQKVIFTWMDGRSSANMVENCVDHSQVQCNPSPLAHQIGKINCACESTVSGKRKYSAAILDVPETIGSHPIDEILLWHNAIKKELNEIAVETRKIQHSGDYTNLSAFNERLQFIAEVFIFHSIAEDKVIFPAVDGDFSFFQEHAEEESQFNDFRSLIERILSEEATSSSEVELYSKLCSHADHIMETIQRHFHNEEVQVLPLARKHFSFQRQRELVYQSLCMMPLKLIERVLPWFVGSLAEVEAEIFLKNIQLAAPAIDSALVTLFSGWACKARKNGQCLSSSASGFCPAKKIVRSSCTCPSALSGKGCPLLAESDGTQRSVKRNILELHKNGDASKTPENECTQKPCCGARSCCVPALGVNSNNLGLSSLSAAKSLRNFTSSAPSLNSSLFIWETDSSSCDVGSAERPIDTIFKFHKAIRIDLEYLDVESGKLCDGDETTIRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKAEEKLFEDISCVLSELSVLHEAMQRTHMSEDLRESNLGIFDANDSDDIRKYNELATKLQGMFKSIRVTLDQHIFREELELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECLIESPGSASQTETSERSTSQRGAEYQESLNLNDQMFKPGWKDIFRMNENEIVSEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKSQSGESSNKQIEGYLPSFRDPEKQVFGCEHYKRNCKIRAACCGKLFTCRFCHDNNSSDHSMDRKATLEMMCMACMTIQPVGPICTTPSCNGLSMAKYYCNICKFFDDERNVYHCPFCNICRVGQGLGIDYFHCMKCNCCVGIKSVSHKCLEKGLEMNCPICCDDLFTSSATVRALACGHYMHSSCFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEQLPEEYRDRSQDILCHDCDRKGTSHFHWLYHKCGFCGSYNTRVIKSETTNSSCP 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03898 1237 Pfam CHY zinc finger 991 1067 IPR008913 GO:0008270
Trre3g03898 1237 CDD Hr-like 51 177 - -
Trre3g03898 1237 Gene3D - 1192 1234 - -
Trre3g03898 1237 CDD RING-H2_Pirh2-like 1120 1163 - -
Trre3g03898 1237 FunFam Zinc finger protein-related isoform 1 1116 1165 - -
Trre3g03898 1237 ProSiteProfiles Zinc finger RING-type profile. 1121 1163 IPR001841 -
Trre3g03898 1237 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 688 1233 - -
Trre3g03898 1237 Pfam Zinc-ribbon 1168 1225 IPR039512 -
Trre3g03898 1237 SUPERFAMILY Zinc hairpin stack 1058 1113 IPR037275 -
Trre3g03898 1237 ProSiteProfiles Zinc finger CHY-type profile. 984 1054 IPR008913 GO:0008270
Trre3g03898 1237 SUPERFAMILY RING/U-box 1118 1167 - -
Trre3g03898 1237 MobiDBLite consensus disorder prediction 877 898 - -
Trre3g03898 1237 SUPERFAMILY CHY zinc finger-like 984 1048 IPR037274 GO:0008270
Trre3g03898 1237 Pfam Ring finger domain 1120 1162 IPR001841 -
Trre3g03898 1237 SMART ring_2 1121 1162 IPR001841 -
Trre3g03898 1237 CDD Hr-like 647 807 - -
Trre3g03898 1237 ProSiteProfiles Zinc finger CTCHY-type profile. 1057 1120 IPR017921 -
Trre3g03898 1237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1114 1165 IPR013083 -
Trre3g03898 1237 Gene3D nmb1532 protein domain like 641 880 - -
Trre3g03898 1237 Pfam Hemerythrin HHE cation binding domain 645 808 IPR012312 -
Trre3g03898 1237 Pfam Hemerythrin HHE cation binding domain 305 439 IPR012312 -
Trre3g03898 1237 Pfam Hemerythrin HHE cation binding domain 57 179 IPR012312 -
Trre3g03898 1237 CDD Hr-like 308 437 - -
Trre3g03898 1237 Gene3D nmb1532 protein domain like 47 197 - -
Trre3g03898 1237 Gene3D nmb1532 protein domain like 308 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03898 Trre-Chr3 50016935 50027181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03898 1 1236 C2H2 Transcription Factor Family AT3G18290 66.640 0.0 1665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03898 K16276 - gmx:100791354 2132.07