Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03893 ATGGCTACTAAGAGATTCTTAGATGATTCTGATCAAGATCCGGATAATAATAATCCAAACGACAAACGAATGAGACCTACTAGACCTTCTTTAGCTTATGTAATTGGAAAAGCAATTGAAGTTCAAAACATGAAGAACCTTTTAGCTGCCTTGGAACCTTTGTTTAAAAGAGTGGTGAGTGAAGAAGTGGATAAAGCAATGAGAAAGCGTTTTCCATGTTCCATCAATCGGTCACCTTCATTAAGAATCCAAGCCCCAAAGGATAAACCACCAACCTTACAACTCTCATTCAACAAAACACTAACCCTCCCAATTTTCACAGGTAGTAGAATACTTGACAATGAAGGTAACCCCATCAACATAACTCTAGTTGAAAAAATCAACAATAACCAAATTATTCCAACAAGTCTTCCTTACCCTATAAAGCTAGAGATTGTTGTTCTTGATGGGGATTTTCCACTTGATGAAAATGAAAATTGGACTAATGAGGAATTCAATAAATACATAGTGAAGGAAAGAGCTGGGAAGAGACCATTGCTTGGTGGAGAAATGAACATTACTATGAGAGATGGAATTGCACCAATTGGGGACATAGAATTCACTGATAATTCTAGCTGGATTAGGAGTAGGAAATTTAGAGTTGCAGTTAAAGTGAGTCATTATGGGAGTAATCAAAGTGTTAGAATTCAAGAAGCAATGACTGAGGCATTTGTTGTTAAGGATCATCGTGGAGAATTGTACAAAAAGCACCACCCACCAAAGCTTGAGGACGATGTGTGGCGCCTAGAGAAAATTGGAAAAGATGGTGCTTTTCATAAGAAAATGATCGATAAAGGGATCAAAACAGTGCAAGATTTTCTCAAATTAGCAGTTATGGATACTCATAAGCTAAGAGAGATTTTGGGCATTGGGATGTCAGATAAAATGTGGGACGTCACAATAAAGCATGCAATGACTTGTGAAATGGGGAGCAAGGTCTATATATACCGTGGACCTCAATTTGTTATTGTTTTGAATCCAATTTGCAAATTAATTAAAGCTAATATCAATGGACAAGAATATTCCAATAGAGAGATGAGACAAATCAATAAGAGCTATATAGACATGTTGGTGAGAGAAGCATACACAAAATGGCATGAGTTGGAGGAATTTGATAGAGTTTTAAATGATAACATTGCTTTGTTAACCCAAGGTGATCAAACTGTGGAACATTGTCCAAACAATCATCCAGCAACAACAGTGGTAACACCATATCATCAAAATGGTTACTATGGTGACAAATTTGCAGAGAATATAGGTAGCTATGTACCAATCAATAATGCACAAATGGGAGGCTCTGAGTGGCCAATATTGAATCAAGGCTATACCACTACAACATTTCCAAATGGATATCCTTTTGGCTTCTCAGGTTCACAATCAGATGGAAACATAACACCTTCAAGTTCAGGCCCTAGGGATATCAATGGTGCCACAAGGCAACTTTAG 1485 0.3724 MATKRFLDDSDQDPDNNNPNDKRMRPTRPSLAYVIGKAIEVQNMKNLLAALEPLFKRVVSEEVDKAMRKRFPCSINRSPSLRIQAPKDKPPTLQLSFNKTLTLPIFTGSRILDNEGNPINITLVEKINNNQIIPTSLPYPIKLEIVVLDGDFPLDENENWTNEEFNKYIVKERAGKRPLLGGEMNITMRDGIAPIGDIEFTDNSSWIRSRKFRVAVKVSHYGSNQSVRIQEAMTEAFVVKDHRGELYKKHHPPKLEDDVWRLEKIGKDGAFHKKMIDKGIKTVQDFLKLAVMDTHKLREILGIGMSDKMWDVTIKHAMTCEMGSKVYIYRGPQFVIVLNPICKLIKANINGQEYSNREMRQINKSYIDMLVREAYTKWHELEEFDRVLNDNIALLTQGDQTVEHCPNNHPATTVVTPYHQNGYYGDKFAENIGSYVPINNAQMGGSEWPILNQGYTTTTFPNGYPFGFSGSQSDGNITPSSSGPRDINGATRQL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03893 494 Pfam Calmodulin binding protein central domain 255 320 IPR046830 -
Trre3g03893 494 MobiDBLite consensus disorder prediction 1 22 - -
Trre3g03893 494 MobiDBLite consensus disorder prediction 468 494 - -
Trre3g03893 494 MobiDBLite consensus disorder prediction 1 28 - -
Trre3g03893 494 Pfam Calmodulin binding protein C-terminal domain 325 384 IPR046829 -
Trre3g03893 494 PANTHER OS02G0177800 PROTEIN 1 442 IPR012416 GO:0005516
Trre3g03893 494 Pfam Calmodulin binding protein-like N-terminal domain 93 242 IPR046831 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03893 Trre-Chr3 49965948 49971722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03893 3 385 Calmodulin-binding Proteins AT5G57580 46.015 1.21e-111 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03893 - - gmx:100803213 621.313