Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03889 ATGTTCACAAATATTACATACATCATGTTCTTAATAATAACAATAATCACTTTGTTTCCAACACAATCCTATTCTCAACCACAACAATCTTATTCAAGTTGTGCAAAATCTTACTCCTACAACTGCGGTAACATCTCCAACATCTATTATCCATTCTGGGGACAAGATCGTCCTTCTTACTGCGGTGCCGGCAAACTTTTTTACCTTAACTGCAACGAAAACAACATTACTACCATTCAATTATACTCACAAAACTTCACAGTACTCGATATTTACACACAAGGTCATACCATGATGCTCAAAAGAACAGATCTTTCAGAAAATCTTTGTTCTCCTCAATTTAATGATACATATTTCAATCCAACTTTGTTTCAGTATCCAAGAGAAATTGCCAAGAACATCACCATATACTATAATTGTAATTCCACTTTCTCTCAATATATACTTGAAAATTCTCTATGTGGATCTCTTAACCCTTCTTTCTGTTCTACTGGTGATGATCAAGATGAACTGTTAAGGAATTGCAAGAAACATATTCAAGTGCCAGTAGGAACAGATTTTCCTATAAATGGAGGTTATTTTGGTTATTTTAAGCGTGATGTTCTTGAAAGTGGTTTGAATCAAGGATTTGAGGTGAAGTATAGTGTGAATAAGGAATGTTTAAGGTGTTTGGGAATTACTGAATTAGAAAAATGTACATTGACAAACAATAGTGATATTGAGAAACTTGCTGTGTCCTCTTGCTATTATGATAATTGTCCAGCTGGATCCAATGTTTTTGCCACAAACTGTCTTCACAAAATCAGTAAGCCGTTAAGCTGGCAAAGGAAAATGCAAGCTATCTCAGGCAGTGCAAGTGCAACATTTGCTGGATTATCAATATGTATCATTATCATTTATTTCATATACAAGTACATAAAGAAGAACCAAGACATCACAAATCAAACCAAAAAGAATGATCAAGACATTGAAGCATTCTTAAAAACTCATGAAGGATTTTCCATAAGAAGATACAAATTCTCAGATATAAAGAAAATGACCAATAACTTTGAAATCAAACTAGGACAAGGTGGCTATGGTATCGTATACAAAGGAAAACTACTCAATGACCGCCCTGTGGCCGTGAAGATACTGAATGCAGCCAAAGGAAATGGTGAAGAATTTATCAATGAAGTTTCTAGCATTACTAAAACCTCTCACATTAATGTTGTTGCCCTTCTTGGATTTTGTTTTGAGGGTCGCAAAAAAGTTCTTATCTACGAATTAATGTCAAATGGTTCGCTTGACAAATTTATTTACAACAACCAGCCTGAAGCTATTCAATCTCTGAGTTGGGAGATTCTTTATCAAATTGCAAAAGGGATAGCTCGAGGGTTAGAGTACTTGCATAGGGGATGTAGCACACGAATTTTACATTTTGACATCAAACCACATAACATTCTTTTAGATGAGAATTTTTGTCCAAAGATATCCGATTTTGGGCTAGCAAGACTTTGTCCCAAGAAAGAGAGCATTATTTCGATGTCAAATGCTAGAGGGACAATGGGATACGTAGCTCCGGAGTTGTGGAATAGAAATTTTGGAGGTGTTTCGCATAAGTCTGATGTTTATAGCTATGGAATGATGTTGTTAGAAATGGTTGGAGGAAGGAAAAACATCGTCGCTGATGCAAGTCATACAAGTGAGTTATACTTTCCTCATTGGGTATACAAGAGGCTTGATCTAGGCACCGGTTTGATACCGGGCGAAATGTTTGCCACAGAAGATGAGATCGCAAAGAGAATGACCATTGTAGGATTATGGTGCATTCAAACATTTCCAAATGATAGACCTACAATGAGTAGAGTGATCGAAATGTTAGAAGGCAATGTAAATTCATTGGAAATACCACCGAAACCTCTCCTTTCTTCTCCTACTAGATCAGTAGCATGA 1932 0.3597 MFTNITYIMFLIITIITLFPTQSYSQPQQSYSSCAKSYSYNCGNISNIYYPFWGQDRPSYCGAGKLFYLNCNENNITTIQLYSQNFTVLDIYTQGHTMMLKRTDLSENLCSPQFNDTYFNPTLFQYPREIAKNITIYYNCNSTFSQYILENSLCGSLNPSFCSTGDDQDELLRNCKKHIQVPVGTDFPINGGYFGYFKRDVLESGLNQGFEVKYSVNKECLRCLGITELEKCTLTNNSDIEKLAVSSCYYDNCPAGSNVFATNCLHKISKPLSWQRKMQAISGSASATFAGLSICIIIIYFIYKYIKKNQDITNQTKKNDQDIEAFLKTHEGFSIRRYKFSDIKKMTNNFEIKLGQGGYGIVYKGKLLNDRPVAVKILNAAKGNGEEFINEVSSITKTSHINVVALLGFCFEGRKKVLIYELMSNGSLDKFIYNNQPEAIQSLSWEILYQIAKGIARGLEYLHRGCSTRILHFDIKPHNILLDENFCPKISDFGLARLCPKKESIISMSNARGTMGYVAPELWNRNFGGVSHKSDVYSYGMMLLEMVGGRKNIVADASHTSELYFPHWVYKRLDLGTGLIPGEMFATEDEIAKRMTIVGLWCIQTFPNDRPTMSRVIEMLEGNVNSLEIPPKPLLSSPTRSVA 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03889 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Trre3g03889 643 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
Trre3g03889 643 CDD STKc_IRAK 354 622 - -
Trre3g03889 643 FunFam PR5-like receptor kinase 423 632 - -
Trre3g03889 643 SUPERFAMILY Protein kinase-like (PK-like) 331 621 IPR011009 -
Trre3g03889 643 Gene3D Phosphorylase Kinase; domain 1 307 422 - -
Trre3g03889 643 Gene3D Transferase(Phosphotransferase) domain 1 423 629 - -
Trre3g03889 643 PANTHER RUST RESISTANCE KINASE LR10-RELATED 318 637 IPR045874 GO:0004672
Trre3g03889 643 ProSiteProfiles Protein kinase domain profile. 348 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03889 643 SMART serkin_6 348 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03889 643 Pfam Protein tyrosine and serine/threonine kinase 351 620 IPR001245 GO:0004672|GO:0006468
Trre3g03889 643 Pfam Wall-associated receptor kinase galacturonan-binding 41 101 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03889 Trre-Chr3 49942645 49945501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03889 37 642 Receptor kinase-like Gene Family AT1G66910 37.382 3.93e-131 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre3g03889 PK_Tyr_Ser-Thr 5.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03889 - - tpra:123887353 1094.72