Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03885 ATGGAGAAAAAAAGAGAGCTCGTATATGAAATATCTAAAGTGTCTCATGATGGTGCATCCGAGATGTTGCAGTCATGTAGTCGTCAAGAGATTTTGCAAATATTGTGTGCTGAGATGGGAAAAGAAAGGAAGTATACTGGGTTGACAAAGGTGAAAATTATCGAAAATCTTCTAAAAATTGTTTCCGAAAAGAATTCAAGCGGACATGATATTGCCACTGACCCTGAACCACATTCTTTTCCTGCAAACGGTCAGAAACCTGCTAAAAGGCAGAGAAAAATTGAGAATCCATCTCGGTTGCCTATTCCTGCAAACAATGTTTTAGTCAATAATGGTGACGATGCGAGTAATAATACCACATACTGCAAAAACTCAGCATGCAAGGCTACCATAAATCAAGCAGATGCATTTTGCAAAAGATGTTCATGTTGTATTTGTCATCAATATGATGACAATAAAGACCCTAGCCTGTGGTTAATATGCAGCTCTGAAGCTCCATTTCCCGGTGTTTCCTGTGGCTTGTCATGCCACCTTGAGTGTGCTTTAAAACATACTGGTTCTGGAATTGGCAAAGACGGTGAACATCCGAAGCTTGATGGAGGCTTCTACTGTGTCTCATGTGGGAAAGTAAATGATTTACTCGGATGCTGGAGAAAACAACTGATGGTAGCAAAGGATGCCAGACGTGTGGACATACTATGTTATCGTGTCTCCTTAAGCCAAAAACTTTTACAAGGGACTGAAGTCTATGGAGAGCTTTATGAAATTGTTGATCAAGCCGTGAAGAAACTTGAACCAGAGGTGGGTCCACTGACTGGCTCACCACTGAAGATTGGTAGGGGAATTGTGAACAGGCTTTCTTCAGGACCTGAGGTTCAGAAACTTTGTGGTGTTGCTCTTGAGTCACTTGATTCGATGCTTTCTAAAAGGATCTTGCCTCCGACGCCCAATCCAACTATTCAAGATGCAAGTTTATTAGCGCCAAATATGGTGAAGTTTGAAGATGTCACTGCAACATCCCTCACTGTTATTTTGTGTTTGGAAGATCCTTCTGGAGAAAATAATGCTGGTTACACTGTGTGGCATCGCAAAGCTGATGATGTGAACTATCCATTGGACCCAGCTTGCACGAATCTCCTACCAAATAGAAGACTCGACATCAGGGATTTACTTCCAGCTACAGAATACAGTTTCAAAGTTGTTTCCAATGATTTGAGGAAGTCGGGTATGTGGGAAGTTCAAGTCACAACAGAGCATGGTGAGGATGAAGTCCCAAATTGTTCAGCAACGGAAAGAAGTCAGAGCCCTGTAACCAACTGTAGCAGTCTTTCCAATCCATCATCAGTGGAAGATGAAACTAATCATAGCGACCAGACCGATAATCGATCAGATAATTATCCTATTTATCACAAGGATAGCAACCAGCTTGCTTCTGCAAATGTATCTAATGATGCTATTAACTGTTCCAATTTGGGCGGAGTGGGACGTCCCACTGATGCAGATTCCTTGTCAGACAAGCAGGTTGCTGTCGGAATGACTGGCACTGTACCTAGTTCTGATGCACTAAAGCTTGAAAGCAAGCATCCGGCAGAGGAACAAGTAACCGAGGACATGAGCACTGATGATGGGTCAGTTCCAACAGGAAGGGAAGGTGTTCCGGTAGCAGGTAGCTCAAAAGGGGGATTGCCTAATACTCCCGGTAGGTTGGAATTACTTAAAGATGGTCTGGGAAGAAAAGGTAGGTCCAAAGCGAGTGGCAAAGATGTAGAAAATGGATCTGGGAAAAGGAGTGGCCCTCGAGATGGAGGCACATCCAAGAAGAGAAGTGGTGAAAGGCAAGACGAGGGCTGTGAGGGAAATGGTTTTCCAGATCGGGATTTTGAGTATTATGTGAAGGTGATTAGATGGTTAGAGTGTGAAGGACACATTGAAAAGAACTTCAGACAGAAATTTCTGACTTGGTACAGCTTAAGAGCAACCCCTGAAGAAATAAGGATTGTGAAAATATATGTAGATACATTTCATGAAGATCCGGCTTCTCTTGCTGAACAACTTGTGGACACCTTCTCAGATTGTGTATCAAACAAGAGATCATCAGTTCCTGCAGGATTCTGCATGAAGCTTTGGCATTGA 2133 0.428 MEKKRELVYEISKVSHDGASEMLQSCSRQEILQILCAEMGKERKYTGLTKVKIIENLLKIVSEKNSSGHDIATDPEPHSFPANGQKPAKRQRKIENPSRLPIPANNVLVNNGDDASNNTTYCKNSACKATINQADAFCKRCSCCICHQYDDNKDPSLWLICSSEAPFPGVSCGLSCHLECALKHTGSGIGKDGEHPKLDGGFYCVSCGKVNDLLGCWRKQLMVAKDARRVDILCYRVSLSQKLLQGTEVYGELYEIVDQAVKKLEPEVGPLTGSPLKIGRGIVNRLSSGPEVQKLCGVALESLDSMLSKRILPPTPNPTIQDASLLAPNMVKFEDVTATSLTVILCLEDPSGENNAGYTVWHRKADDVNYPLDPACTNLLPNRRLDIRDLLPATEYSFKVVSNDLRKSGMWEVQVTTEHGEDEVPNCSATERSQSPVTNCSSLSNPSSVEDETNHSDQTDNRSDNYPIYHKDSNQLASANVSNDAINCSNLGGVGRPTDADSLSDKQVAVGMTGTVPSSDALKLESKHPAEEQVTEDMSTDDGSVPTGREGVPVAGSSKGGLPNTPGRLELLKDGLGRKGRSKASGKDVENGSGKRSGPRDGGTSKKRSGERQDEGCEGNGFPDRDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATPEEIRIVKIYVDTFHEDPASLAEQLVDTFSDCVSNKRSSVPAGFCMKLWH 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03885 710 Gene3D Immunoglobulins 324 424 IPR013783 -
Trre3g03885 710 MobiDBLite consensus disorder prediction 515 619 - -
Trre3g03885 710 ProSiteProfiles Fibronectin type-III domain profile. 327 422 IPR003961 GO:0005515
Trre3g03885 710 PANTHER VIN3-LIKE PROTEIN 2-RELATED 1 710 IPR044514 GO:0010048|GO:0040029
Trre3g03885 710 MobiDBLite consensus disorder prediction 572 619 - -
Trre3g03885 710 MobiDBLite consensus disorder prediction 421 452 - -
Trre3g03885 710 Pfam PHD - plant homeodomain finger protein 122 241 IPR032881 -
Trre3g03885 710 CDD PHD_VIN3_plant 142 207 - -
Trre3g03885 710 MobiDBLite consensus disorder prediction 417 470 - -
Trre3g03885 710 MobiDBLite consensus disorder prediction 453 467 - -
Trre3g03885 710 MobiDBLite consensus disorder prediction 67 107 - -
Trre3g03885 710 CDD FN3 327 417 IPR003961 GO:0005515
Trre3g03885 710 SUPERFAMILY Fibronectin type III 327 433 IPR036116 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03885 Trre-Chr3 49911650 49914866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03885 1 588 PHD Gene Family AT4G30200 47.326 8.37e-153 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03885 - - gmx:100794721 1179.85