Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03875 ATGTATCTTCATTTTTCGATCTTCATCAGCACGTTTGCCCTTGTTGCTGCTATTTTATCTGTGTTGGCAACACTTGCCGTGATCACAGGCATATGGTTCTATTGGCGCCGACGCCAAAACAATGGCAGCCAACTGATTAGTAATGAATTTGGCGTTCAGTTTCGGCATCGGTATTTCTCTTTTGAAGAACTAAGTGATGCCACAAAACAATTTTCCGAAGGAAATCGACTTGGATATGGAGGCACTGCGACTGTGTATAAAGGCACTCTGCCTGTTGACGGGCGTCTTGTTGCAGTGAAGTGGTGTGAAGACTACCAACCTCGCATAGAAATGATGTTTAAGAATGAAGTTGAGAGGCTGACTGAACTTAATCATCCAAATATTGTAGCCTTATATGGATGCACTCGACCCTTAGAGAAGCGCCGTATGCTTGTTTATGAGTATGTCGAGAATAAAGATTTGGAGCATCATCTTCGTATTGCAAGCATTTTTCATCTTCCTTGGAATATTAGGATGAATATTGCTGTGGAGATAGCAAGTGCATTGAAGTATATTCATGCTCTTGACATCATTCACAGAGACATAAAACCCAGCAATATTCTTCTTAACAAAGACATGCATGCCAAAGTAGGAGATTTTGGAATCGCACGTCATTTTCATCATGACCAAATTAGCTATGTTAAAACAAATCATATACAAGGGACTCCAGGTTATGAAGATCCCGAGTACATACAAACCTACCAGTTTAGTAAAAAAAGTGACGTCTACAGCTTTGGAGTTGTATTGATTAACCTGGTATCATCGTTGGAAGCTATTGATATTAACAGAGCTGATTGCAATCTAATCCCGATGGCTATGGAGATGATTCAAAATAATGCTTTGGATAAACTTGTGGATGGTAGCCTAGGTTTTGATTCAGATCCCAAGGTAACGGATATGATAACTGGTGTGATTGAATTAGCAGTTCGGTGTCTAGAAAAGTGTTCCAAAGATAGACCTAGCATGGACGAAGTGTCTGAACGTTTAGAAGAGATTCAGAAGGCTGGTGATCCTGATCCATATTCACGACCAGCTGATTCTAACTCCGTGAGCTATTATTCAGCACAAAATGTTAGTGTATAG 1122 0.402 MYLHFSIFISTFALVAAILSVLATLAVITGIWFYWRRRQNNGSQLISNEFGVQFRHRYFSFEELSDATKQFSEGNRLGYGGTATVYKGTLPVDGRLVAVKWCEDYQPRIEMMFKNEVERLTELNHPNIVALYGCTRPLEKRRMLVYEYVENKDLEHHLRIASIFHLPWNIRMNIAVEIASALKYIHALDIIHRDIKPSNILLNKDMHAKVGDFGIARHFHHDQISYVKTNHIQGTPGYEDPEYIQTYQFSKKSDVYSFGVVLINLVSSLEAIDINRADCNLIPMAMEMIQNNALDKLVDGSLGFDSDPKVTDMITGVIELAVRCLEKCSKDRPSMDEVSERLEEIQKAGDPDPYSRPADSNSVSYYSAQNVSV 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03875 373 SMART serkin_6 71 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03875 373 MobiDBLite consensus disorder prediction 357 373 - -
Trre3g03875 373 MobiDBLite consensus disorder prediction 333 373 - -
Trre3g03875 373 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 21 352 IPR044652 GO:0004672
Trre3g03875 373 SUPERFAMILY Protein kinase-like (PK-like) 52 348 IPR011009 -
Trre3g03875 373 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Trre3g03875 373 Gene3D Transferase(Phosphotransferase) domain 1 149 361 - -
Trre3g03875 373 Pfam Protein kinase domain 72 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03875 373 ProSiteProfiles Protein kinase domain profile. 71 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03875 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Trre3g03875 373 Gene3D Phosphorylase Kinase; domain 1 46 148 - -
Trre3g03875 373 MobiDBLite consensus disorder prediction 333 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03875 Trre-Chr3 49837842 49839287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03875 15 346 Receptor kinase-like Gene Family AT1G25390 43.605 8.65e-77 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trre3g03875 Pkinase 1.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03875 - - mtr:25496819 285.804