Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03857 ATGAAGAACCAAATGACATTTCTTGAAGCCACTTTCCATTACAATAAACCTCAACTCAACATTATCACCATTATCTTGTTCTTGATCACAATTGTTCAATCTATTAATCCAAAATTTGAGGCATGCACACCTCAAACCTGTGGAAATGGTCCCTCCATAAAGTATCCTTTTTGGATCCCATATCAACAAGATTCATTTTGTGGTTATCCACAATTTGAGATCACATGCAAAAACAACAATCCAATTCTCAAAACTTCAACTTATGATCTTTTAGTAAAAAACATCTCTTACTCAAACTCTTCATTACTTGCAACCAACATAGATGTCTATGACAAAAACTGTCCTGCTCCTATGTATAATTACACCCTTGCCCTTGATCAAACTCCATTTACATATAGTTCTGAAAATTCCAATCTTTCTTTCTTCTACAACTGTACAACAGAACCTATAGATTATCCTACTTATGATGTAGAATGTGCAGAAAATGCTACACATTATTCTTTTGCTGTTTTTCATAAGGAAGCATTAGAGCACAAAAACTATTCGTTGAATGAGTGTGAGTTTATGGTTAATACACCATTGGTTTTGAATACTAGTGTTAATTTCACTAGCTTGTTGAGAATGAGTTACATCGATGTTTTGAAGATGGGATTTGTTTTGAATTGGACTGTACCTGATTGTCAACATTGTGAGAAAAGTGGTGGAAGATGTGGATTTGATAATTATAAGTTCATATGTTTCTGCAAGGATAAGTCCTACCTAAAAATTTGTGGTGACGATGATGCTCTTGCTGCTTCTATTTTCGGAGCACTTGCAATGATAACTGCGATATATTTTTGTAAGCGCCGGAAGAATATAAGTTATGCAAAGTCATATGTACAGTCTCACAGCCTCTCTACCGATCCATCGTCAAAGGATCTTGAGAGATCAGGAAGTCAATACTTTGGAGGAAGTCAAAACTTTGGAGTGCAACATTTCACTTATAGCGAGCTTGAAGAAGCCACAAACTTCTTCGATCCAACCAAAGAACTAGGAGAAGGGGGCTTTGGGACAGTGTACTTTGGAAAACTGTATGATGGGCGTAGTGTTGCAGTGAAGAGGTTATACGAGAACAATTACAAAAGAGTCGAGCAATTCATGAATGAAGTTAAACTCTTAGCAGGATTAGTCCATCCAAATCTCGTGTCTCTATATGGATGCACTTCACGCCACAGTCGGGAACTTCTACTTGTCTACGAGTATGTGTCCAATGGAACTGTTGCTGATCATCTCCATGGTAAACAAACAAAACATGGAAAGCTTTCTTGGCCGATTAGAATGAATATTGCCGTGGAGACAGCAAGTGCGTTGAAGTATCTTCATATTTCTGACATCATTCACCGAGATATTAAAACCAATAATATTCTTCTTGACGCTCACTTCCGCGTCAAAGTAGCAGATTTTGGACTCTCACGTCTTTTTCCATATGATCAAACTCATGTTTCAACGGCTCCACAAGGGACTCCAGGTTATGTCGATCCTGATTACCATCAATGCTATCAACTTACCGACAAAAGTGATGTCTATAGCTTTGGAGTTGTGTTGATCGAGTTGATATCGTCTTTACCTGCCGTTGATATAACAAGGCATAGACATGAAATCAATTTATCCAACATGGCTATTAACAGAATTCAAAATCAAGCATTGCATGAAATTGTCGATCCTACCCTCGGTTATGAATCAGATCCAAAGGTAAAGAAAATGATAAATGCTATTGGTGAATTAGCATTTCAATGTTTACAAAGTTCCAAAGATTTAAGACCTTGCATGGATGATGTGTTAGAAACTTTATTGGATATTCAAAGTGATGGTAAACATAAAAGTAAACCTGAGGTATTGGACATTTCAAGTTTAGCTGATGATGTTGTTTTGTTGAATCATGATCCACCTCCATTATCACCTGATTCAAATCTTGGTAGCAATTATACAACACCAAATACTAGTGGTTAA 1989 0.3675 MKNQMTFLEATFHYNKPQLNIITIILFLITIVQSINPKFEACTPQTCGNGPSIKYPFWIPYQQDSFCGYPQFEITCKNNNPILKTSTYDLLVKNISYSNSSLLATNIDVYDKNCPAPMYNYTLALDQTPFTYSSENSNLSFFYNCTTEPIDYPTYDVECAENATHYSFAVFHKEALEHKNYSLNECEFMVNTPLVLNTSVNFTSLLRMSYIDVLKMGFVLNWTVPDCQHCEKSGGRCGFDNYKFICFCKDKSYLKICGDDDALAASIFGALAMITAIYFCKRRKNISYAKSYVQSHSLSTDPSSKDLERSGSQYFGGSQNFGVQHFTYSELEEATNFFDPTKELGEGGFGTVYFGKLYDGRSVAVKRLYENNYKRVEQFMNEVKLLAGLVHPNLVSLYGCTSRHSRELLLVYEYVSNGTVADHLHGKQTKHGKLSWPIRMNIAVETASALKYLHISDIIHRDIKTNNILLDAHFRVKVADFGLSRLFPYDQTHVSTAPQGTPGYVDPDYHQCYQLTDKSDVYSFGVVLIELISSLPAVDITRHRHEINLSNMAINRIQNQALHEIVDPTLGYESDPKVKKMINAIGELAFQCLQSSKDLRPCMDDVLETLLDIQSDGKHKSKPEVLDISSLADDVVLLNHDPPPLSPDSNLGSNYTTPNTSG 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03857 662 Pfam Protein kinase domain 341 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03857 662 FunFam Wall-associated receptor kinase-like 20 415 623 - -
Trre3g03857 662 Pfam Wall-associated receptor kinase galacturonan-binding 42 102 IPR025287 GO:0030247
Trre3g03857 662 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 23 657 IPR044652 GO:0004672
Trre3g03857 662 MobiDBLite consensus disorder prediction 646 662 - -
Trre3g03857 662 Gene3D Phosphorylase Kinase; domain 1 316 414 - -
Trre3g03857 662 ProSiteProfiles Protein kinase domain profile. 338 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03857 662 Gene3D Transferase(Phosphotransferase) domain 1 415 625 - -
Trre3g03857 662 SMART serkin_6 338 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03857 662 SUPERFAMILY Protein kinase-like (PK-like) 320 616 IPR011009 -
Trre3g03857 662 Pfam Wall-associated receptor kinase C-terminal 165 251 IPR032872 -
Trre3g03857 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Trre3g03857 662 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Trre3g03857 662 MobiDBLite consensus disorder prediction 640 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03857 Trre-Chr3 49669835 49672745 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03857 218 662 Receptor kinase-like Gene Family AT1G25390 50.533 8.62e-142 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trre3g03857 Pkinase 3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03857 - - qsu:112024175 767.303