Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03856 ATGAAGAACCAAATGACATTTCTTGAAGCCACTTTCCATTACAATAAACCTCAACTCAACATTATCACCATTATCTTGTTCTTGATCACAATTGTTCAATCTATTAATCCAAAATTTGAGGCATGCACACCTCAAACCTGTGGAAATGGTCCCTCCATAAAGTATCCTTTTTGGATCCCATATCAACAAGATTCATTTTGTGGTTATCCACAATTTGAGATCACATGCAAAAACAACAATCCAATTCTCAAAACTTCAACTTATGATCTTTTAGTAAAAAACATCTCTTACTCAAACTCTTCATTACTTGCAACCAACATAGATGTCTATGACAAAAACTGTCCTGCTCCTATGTATAATTACACCCTTGCCCTTGATCAAACTCCATTTACATATAGTTCTGAAAATTCCAATCTTTCTTTCTTCTACAACTGTACAACAGAACCTATAGATTATCCTACTTATGATGTAGAATGTGCAGAAAATGCTACACATTATTCTTTTGCTGTTTTTCATAAGGAAGCATTAGAGCACAAAAACTATTCGTTGAATGAGTGTGAGTTTATGGTTAATACACCATTGGTTTTGAATACTAGTGTTAATTTCACTAGCTTGTTGAGAATGAGTTACATCGATGTTTTGAAGATGGGATTTGTTTTGAATTGGACTGTACCTGATTGTCAACATTGTGAGAAAAGTGGTGGAAGATGTGGATTTGATAATTATAAGTTCATATGTTTCTGCAAGGATAAGTCCTACCTAAAAATTTGTGGTGACGATGATGGCCCGTTGAATTGGAAGAGGAAACTCCTTATTGCTCTTGCTGCTTCTATTTTCGGAGCACTTGCAATGATAACTGCGATATATTTTTGTAAGCGCCGGAAGAATATAAGTTATGCAAAGTCATATGTACAGTCTCACAGCCTCTCTACCGATCCATCGTCAAAGGATCTTGAGAGATCAGGAAGTCAATACTTTGGAGGAAGTCAAAACTTTGGAGTGCAACATTTCACTTATAGCGAGCTTGAAGAAGCCACAAACTTCTTCGATCCAACCAAAGAACTAGGAGAAGGGGGCTTTGGGACAGTGTACTTTGGAAAACTGTATGATGGGCGTAGTGTTGCAGTGAAGAGGTTATACGAGAACAATTACAAAAGAGTCGAGCAATTCATGAATGAAGTTAAACTCTTAGCAGGATTAGTCCATCCAAATCTCGTGTCTCTATATGGATGCACTTCACGCCACAGTCGGGAACTTCTACTTGTCTACGAGTATGTGTCCAATGGAACTGTTGCTGATCATCTCCATGGTAAACAAACAAAACATGGAAAGCTTTCTTGGCCGATTAGAATGAATATTGCCGTGGAGACAGCAAGTGCGTTGAAGTATCTTCATATTTCTGACATCATTCACCGAGATATTAAAACCAATAATATTCTTCTTGACGCTCACTTCCGCGTCAAAGTAGCAGATTTTGGACTCTCACGTCTTTTTCCATATGATCAAACTCATGTTTCAACGGCTCCACAAGGGACTCCAGGTTATGTCGATCCTGATTACCATCAATGCTATCAACTTACCGACAAAAGTGATGTCTATAGCTTTGGAGTTGTGTTGATCGAGTTGATATCGTCTTTACCTGCCGTTGATATAACAAGGCATAGACATGAAATCAATTTATCCAACATGGCTATTAACAGAATTCAAAATCAAGCATTGCATGAAATTGTCGATCCTACCCTCGGTTATGAATCAGATCCAAAGGTAAAGAAAATGATAAATGCTATTGGTGAATTAGCATTTCAATGTTTACAAAGTTCCAAAGATTTAAGACCTTGCATGGATGATGTGTTAGAAACTTTATTGGATATTCAAAGTGATGGTAAACATAAAAGTAAACCTGAGGTATTGGACATTTCAAGTTTAGCTGATGATGTTGTTTTGTTGAATCATGATCCACCTCCATTATCACCTGATTCAAATCTTGGTAGCAATTATACAACACCAAATACTAGTGGTTAA 2022 0.3689 MKNQMTFLEATFHYNKPQLNIITIILFLITIVQSINPKFEACTPQTCGNGPSIKYPFWIPYQQDSFCGYPQFEITCKNNNPILKTSTYDLLVKNISYSNSSLLATNIDVYDKNCPAPMYNYTLALDQTPFTYSSENSNLSFFYNCTTEPIDYPTYDVECAENATHYSFAVFHKEALEHKNYSLNECEFMVNTPLVLNTSVNFTSLLRMSYIDVLKMGFVLNWTVPDCQHCEKSGGRCGFDNYKFICFCKDKSYLKICGDDDGPLNWKRKLLIALAASIFGALAMITAIYFCKRRKNISYAKSYVQSHSLSTDPSSKDLERSGSQYFGGSQNFGVQHFTYSELEEATNFFDPTKELGEGGFGTVYFGKLYDGRSVAVKRLYENNYKRVEQFMNEVKLLAGLVHPNLVSLYGCTSRHSRELLLVYEYVSNGTVADHLHGKQTKHGKLSWPIRMNIAVETASALKYLHISDIIHRDIKTNNILLDAHFRVKVADFGLSRLFPYDQTHVSTAPQGTPGYVDPDYHQCYQLTDKSDVYSFGVVLIELISSLPAVDITRHRHEINLSNMAINRIQNQALHEIVDPTLGYESDPKVKKMINAIGELAFQCLQSSKDLRPCMDDVLETLLDIQSDGKHKSKPEVLDISSLADDVVLLNHDPPPLSPDSNLGSNYTTPNTSG 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03856 673 Pfam Protein kinase domain 352 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03856 673 SMART serkin_6 349 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03856 673 Pfam Wall-associated receptor kinase galacturonan-binding 42 102 IPR025287 GO:0030247
Trre3g03856 673 Pfam Wall-associated receptor kinase C-terminal 165 251 IPR032872 -
Trre3g03856 673 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 23 668 IPR044652 GO:0004672
Trre3g03856 673 Gene3D Transferase(Phosphotransferase) domain 1 426 636 - -
Trre3g03856 673 ProSiteProfiles Protein kinase domain profile. 349 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03856 673 MobiDBLite consensus disorder prediction 651 673 - -
Trre3g03856 673 FunFam Wall-associated receptor kinase-like 20 426 634 - -
Trre3g03856 673 Gene3D Phosphorylase Kinase; domain 1 327 425 - -
Trre3g03856 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Trre3g03856 673 SUPERFAMILY Protein kinase-like (PK-like) 331 627 IPR011009 -
Trre3g03856 673 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Trre3g03856 673 MobiDBLite consensus disorder prediction 657 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03856 Trre-Chr3 49669835 49672745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03856 218 673 Receptor kinase-like Gene Family AT1G25390 50.522 6.93e-144 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trre3g03856 Pkinase 3.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03856 - - qsu:112024175 772.696