Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre3g03856 | ATGAAGAACCAAATGACATTTCTTGAAGCCACTTTCCATTACAATAAACCTCAACTCAACATTATCACCATTATCTTGTTCTTGATCACAATTGTTCAATCTATTAATCCAAAATTTGAGGCATGCACACCTCAAACCTGTGGAAATGGTCCCTCCATAAAGTATCCTTTTTGGATCCCATATCAACAAGATTCATTTTGTGGTTATCCACAATTTGAGATCACATGCAAAAACAACAATCCAATTCTCAAAACTTCAACTTATGATCTTTTAGTAAAAAACATCTCTTACTCAAACTCTTCATTACTTGCAACCAACATAGATGTCTATGACAAAAACTGTCCTGCTCCTATGTATAATTACACCCTTGCCCTTGATCAAACTCCATTTACATATAGTTCTGAAAATTCCAATCTTTCTTTCTTCTACAACTGTACAACAGAACCTATAGATTATCCTACTTATGATGTAGAATGTGCAGAAAATGCTACACATTATTCTTTTGCTGTTTTTCATAAGGAAGCATTAGAGCACAAAAACTATTCGTTGAATGAGTGTGAGTTTATGGTTAATACACCATTGGTTTTGAATACTAGTGTTAATTTCACTAGCTTGTTGAGAATGAGTTACATCGATGTTTTGAAGATGGGATTTGTTTTGAATTGGACTGTACCTGATTGTCAACATTGTGAGAAAAGTGGTGGAAGATGTGGATTTGATAATTATAAGTTCATATGTTTCTGCAAGGATAAGTCCTACCTAAAAATTTGTGGTGACGATGATGGCCCGTTGAATTGGAAGAGGAAACTCCTTATTGCTCTTGCTGCTTCTATTTTCGGAGCACTTGCAATGATAACTGCGATATATTTTTGTAAGCGCCGGAAGAATATAAGTTATGCAAAGTCATATGTACAGTCTCACAGCCTCTCTACCGATCCATCGTCAAAGGATCTTGAGAGATCAGGAAGTCAATACTTTGGAGGAAGTCAAAACTTTGGAGTGCAACATTTCACTTATAGCGAGCTTGAAGAAGCCACAAACTTCTTCGATCCAACCAAAGAACTAGGAGAAGGGGGCTTTGGGACAGTGTACTTTGGAAAACTGTATGATGGGCGTAGTGTTGCAGTGAAGAGGTTATACGAGAACAATTACAAAAGAGTCGAGCAATTCATGAATGAAGTTAAACTCTTAGCAGGATTAGTCCATCCAAATCTCGTGTCTCTATATGGATGCACTTCACGCCACAGTCGGGAACTTCTACTTGTCTACGAGTATGTGTCCAATGGAACTGTTGCTGATCATCTCCATGGTAAACAAACAAAACATGGAAAGCTTTCTTGGCCGATTAGAATGAATATTGCCGTGGAGACAGCAAGTGCGTTGAAGTATCTTCATATTTCTGACATCATTCACCGAGATATTAAAACCAATAATATTCTTCTTGACGCTCACTTCCGCGTCAAAGTAGCAGATTTTGGACTCTCACGTCTTTTTCCATATGATCAAACTCATGTTTCAACGGCTCCACAAGGGACTCCAGGTTATGTCGATCCTGATTACCATCAATGCTATCAACTTACCGACAAAAGTGATGTCTATAGCTTTGGAGTTGTGTTGATCGAGTTGATATCGTCTTTACCTGCCGTTGATATAACAAGGCATAGACATGAAATCAATTTATCCAACATGGCTATTAACAGAATTCAAAATCAAGCATTGCATGAAATTGTCGATCCTACCCTCGGTTATGAATCAGATCCAAAGGTAAAGAAAATGATAAATGCTATTGGTGAATTAGCATTTCAATGTTTACAAAGTTCCAAAGATTTAAGACCTTGCATGGATGATGTGTTAGAAACTTTATTGGATATTCAAAGTGATGGTAAACATAAAAGTAAACCTGAGGTATTGGACATTTCAAGTTTAGCTGATGATGTTGTTTTGTTGAATCATGATCCACCTCCATTATCACCTGATTCAAATCTTGGTAGCAATTATACAACACCAAATACTAGTGGTTAA | 2022 | 0.3689 | MKNQMTFLEATFHYNKPQLNIITIILFLITIVQSINPKFEACTPQTCGNGPSIKYPFWIPYQQDSFCGYPQFEITCKNNNPILKTSTYDLLVKNISYSNSSLLATNIDVYDKNCPAPMYNYTLALDQTPFTYSSENSNLSFFYNCTTEPIDYPTYDVECAENATHYSFAVFHKEALEHKNYSLNECEFMVNTPLVLNTSVNFTSLLRMSYIDVLKMGFVLNWTVPDCQHCEKSGGRCGFDNYKFICFCKDKSYLKICGDDDGPLNWKRKLLIALAASIFGALAMITAIYFCKRRKNISYAKSYVQSHSLSTDPSSKDLERSGSQYFGGSQNFGVQHFTYSELEEATNFFDPTKELGEGGFGTVYFGKLYDGRSVAVKRLYENNYKRVEQFMNEVKLLAGLVHPNLVSLYGCTSRHSRELLLVYEYVSNGTVADHLHGKQTKHGKLSWPIRMNIAVETASALKYLHISDIIHRDIKTNNILLDAHFRVKVADFGLSRLFPYDQTHVSTAPQGTPGYVDPDYHQCYQLTDKSDVYSFGVVLIELISSLPAVDITRHRHEINLSNMAINRIQNQALHEIVDPTLGYESDPKVKKMINAIGELAFQCLQSSKDLRPCMDDVLETLLDIQSDGKHKSKPEVLDISSLADDVVLLNHDPPPLSPDSNLGSNYTTPNTSG | 673 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre3g03856 | 673 | Pfam | Protein kinase domain | 352 | 619 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre3g03856 | 673 | SMART | serkin_6 | 349 | 622 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre3g03856 | 673 | Pfam | Wall-associated receptor kinase galacturonan-binding | 42 | 102 | IPR025287 | GO:0030247 | |
Trre3g03856 | 673 | Pfam | Wall-associated receptor kinase C-terminal | 165 | 251 | IPR032872 | - | |
Trre3g03856 | 673 | PANTHER | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 | 23 | 668 | IPR044652 | GO:0004672 | |
Trre3g03856 | 673 | Gene3D | Transferase(Phosphotransferase) domain 1 | 426 | 636 | - | - | |
Trre3g03856 | 673 | ProSiteProfiles | Protein kinase domain profile. | 349 | 622 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre3g03856 | 673 | MobiDBLite | consensus disorder prediction | 651 | 673 | - | - | |
Trre3g03856 | 673 | FunFam | Wall-associated receptor kinase-like 20 | 426 | 634 | - | - | |
Trre3g03856 | 673 | Gene3D | Phosphorylase Kinase; domain 1 | 327 | 425 | - | - | |
Trre3g03856 | 673 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 469 | 481 | IPR008271 | GO:0004672|GO:0006468 | |
Trre3g03856 | 673 | SUPERFAMILY | Protein kinase-like (PK-like) | 331 | 627 | IPR011009 | - | |
Trre3g03856 | 673 | ProSitePatterns | Protein kinases ATP-binding region signature. | 355 | 377 | IPR017441 | GO:0005524 | |
Trre3g03856 | 673 | MobiDBLite | consensus disorder prediction | 657 | 673 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre3g03856 | Trre-Chr3 | 49669835 | 49672745 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre3g03856 | 218 | 673 | Receptor kinase-like Gene Family | AT1G25390 | 50.522 | 6.93e-144 | 431 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_WAK_LRK10L-1 | Trre3g03856 | Pkinase | 3.1e-46 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre3g03856 | - | - | qsu:112024175 | 772.696 |