Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03841 ATGGATAACCACATCCCTATGTTCACAAATATTAAATACATCTCTTTCTTCTTTTTCTTCTCAATAATAACCACTTTTATCCCTCAACAATCTAAATCAGTTTACAATTATTCAACTTGTAGAGACATAAAAAACTCCTACAATTGTGGACATATCACCAACATCTCCTATCCATTCTGGGGACAAAATGGCAATTATAACTGCGGCGCCGGCGAACCATTTTATCTTCACTGCAATCCCGAAAACAACGTTACTACCATTCAATTATCCTTACAAAATTTCACAGTACTTGATATCAACACCACAACTCACACCATCAAACTCCAAAAACCAAACCTTTATCAAGATTTTTGTTCTCCTCAATTTGATGACAATTTTTTACCTCCAACTCTGTTTCACCTTCTCCCAACTCTCAAGAACATCACCATATACTACGATTGTTCCTCTCAGTATTCAAAACTTTCTCCATGTGGACCTCAGAGCCAGAATCCTTCTTTCTTTTATGTTGGTAATGAAAACAATGAAGTATTAAGCAGTTGCAAGAGACATATTCAAGTACCAGTAGGAACAGAGTTTCCTATAGAGAATAATCTCGATGGTTATTTCGACCGTGAAGTTCTTGAAAGTGATTGGGATAAGGGGTTTGAGGTGGAGTATATTGTGAATAATGAGGAATGTTTGAAGTGTTTAGGAAATGATGAAGGAGATTGTGAATGGAAGAACGATGATGATATTGAGAAACATGTCAAGTCCTCTTGTTATTATGATAATTGTCCAGATGGATCTTTTGCTTATTTATCACACTGTTCTCACAAAAGTAAGCTTTTGAGCTCGCAAGGGAAAATGAAAATCATTCTAGGTGTTGGAAGTGCAGCAATGGTAGCATTGGTGATGTGCATCATAATTTTTTGTTTTAGAAGCAGGTTATCAATACAGCACTTAAAATTTCGGTTGAAGGCAAATCGTGATAGAAACATTGAAGCATTTTTAAAAGATCATGGAGCTCTATTGCAAAAAAGATATAAATTTTCAGAAATAAAGAAAATGACAAACTCATTCAAAATTAAACTTGGTCAAGGGGGTTTTGGTGTTGTGTACAAAGGAAAATTAAGCAATGGTTGTCTCGTGGCAGTGAAGATATTGAATGCATCGAAAGGAAATGGAGAAGAGTTTATTAATGAGGTTGCTAGTATTACTCGAACCTCGCATGTTAATATTGTCACCCTTCTTGGATTTTGTTTCGAAGGTCGTAAAAAAGCTCTCATATATGAATTTATGTCTAATGGTTCTCTTGACAAATTTATTTACAATAAGGGACCTGAAACTGTTACATCTTTAAGTTGGGATAATTTGCATCAAATTGCAAAAGGAATAGCTCGTGGACTGGAGTACTTACATAGAGGATGTACCACTCGAATTTTACATTTTGACATAAAACCACATAACATTCTTTTGGATGAGAATTTTTGTCCAAAGATTTCAGATTTCGGACTTGCAAAACTCAACCTCAAGAAAGAGAGCATTATTTCGATGTCGGGTCAAAGAGGCACCATGGGGTATGTAGCTCTAGAAATGTGGAATAGACATTTTGGAGGAGTTTCACACAAGTCTGATGTTTATAGTTATGGAATTATGTTGTTAGAAATGGTGGGTGGAAGGAAAAACATTAACGCCGATGCAAGTCACACAAGTGAGATATACTTTCCTCATTGGGTATACAGTAGGCTTGAACTTGGTAGTGATTTGAGACCTTATGAGATAATGGATACAGAAGAAGATGATATTGCAAGAAGAATGACCATTGTGGGTTTGTGGTGTATTCAAACATTTCCTAACGATAGACCTACAATGAGTAAAGTGATTGAAATGTTAGAAGGTAGCATGAAGTCATTGGAAATACCACCAAAACCATTGCTTTCATCTCCTACTAGATCAGAATCAGAGTCTTGCACGTCTTAA 1959 0.3578 MDNHIPMFTNIKYISFFFFFSIITTFIPQQSKSVYNYSTCRDIKNSYNCGHITNISYPFWGQNGNYNCGAGEPFYLHCNPENNVTTIQLSLQNFTVLDINTTTHTIKLQKPNLYQDFCSPQFDDNFLPPTLFHLLPTLKNITIYYDCSSQYSKLSPCGPQSQNPSFFYVGNENNEVLSSCKRHIQVPVGTEFPIENNLDGYFDREVLESDWDKGFEVEYIVNNEECLKCLGNDEGDCEWKNDDDIEKHVKSSCYYDNCPDGSFAYLSHCSHKSKLLSSQGKMKIILGVGSAAMVALVMCIIIFCFRSRLSIQHLKFRLKANRDRNIEAFLKDHGALLQKRYKFSEIKKMTNSFKIKLGQGGFGVVYKGKLSNGCLVAVKILNASKGNGEEFINEVASITRTSHVNIVTLLGFCFEGRKKALIYEFMSNGSLDKFIYNKGPETVTSLSWDNLHQIAKGIARGLEYLHRGCTTRILHFDIKPHNILLDENFCPKISDFGLAKLNLKKESIISMSGQRGTMGYVALEMWNRHFGGVSHKSDVYSYGIMLLEMVGGRKNINADASHTSEIYFPHWVYSRLELGSDLRPYEIMDTEEDDIARRMTIVGLWCIQTFPNDRPTMSKVIEMLEGSMKSLEIPPKPLLSSPTRSESESCTS 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03841 652 PANTHER RUST RESISTANCE KINASE LR10-RELATED 322 645 IPR045874 GO:0004672
Trre3g03841 652 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524
Trre3g03841 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Trre3g03841 652 FunFam serine/threonine-protein kinase PBS1-like 320 425 - -
Trre3g03841 652 Pfam Protein kinase domain 356 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03841 652 Pfam Wall-associated receptor kinase galacturonan-binding 46 108 IPR025287 GO:0030247
Trre3g03841 652 FunFam PR5-like receptor kinase 426 636 - -
Trre3g03841 652 Gene3D Transferase(Phosphotransferase) domain 1 426 633 - -
Trre3g03841 652 MobiDBLite consensus disorder prediction 632 652 - -
Trre3g03841 652 SMART serkin_6 351 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03841 652 Gene3D Phosphorylase Kinase; domain 1 312 425 - -
Trre3g03841 652 ProSiteProfiles Protein kinase domain profile. 351 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03841 652 SUPERFAMILY Protein kinase-like (PK-like) 338 625 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03841 Trre-Chr3 49507053 49509791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03841 46 651 Receptor kinase-like Gene Family AT1G66910 39.498 8.06e-136 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre3g03841 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03841 - - tpra:123887353 801.971