Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03839 ATGGGATGGGATCCCTGTATGTTGTGTTGTTGCTTCACTAGCTCTTCTGACACATTTCCAGACCAGAGTAAGTTGAAGTGGCAAATCTTCCCCTATAAGCAACTTACAAAAGCCACAAATTATTTTAATCAAGGTCGTATTCTTGACAAGAAAAGCTTTGCCACAACATACTATGGAAAACTTAAAAATGGTCGCGAGATTGCAGTTCAAAGCTATAATGAAGACAAGTGCAACATATTGAAACAGTTCATCAATGAAACTGTTATCCTAAACTGCATGCCCCACAAAAACCTTGTTACAATTTATGGATGTGCCACTCATCAAAAGGAATCCTTGCTAGTACTTGAATACATGTCCAATGGAACTCTTGCTGCTCATATTCAAAGCCAAATATCAGAAAGCAGAACAACATTAAATTGGCATTACAGATTGGATATGGCAATTGATATTGCAAATGCACTGGACCATCTTCACCATAATGGCATTGTCCATCGTAATGTTAAGTCTCACAATATTTTCCTAGACATAAACTTTTGTGCTAAACTTTCTAACTTTTATCAATCAAAGAAACTTGATGATGAAACCCATGTTACAAGAGGCGTAATAGGAACAGGTGGTTATATAGACCCGGAACTTGTGTCAAAAGGCTTACTTTGTGTCAAAAATGATGTTTATAGCTTTGGTGTGGTGTTGTGTGAGCTTATGTCATCTAAGCTTGCAGAGTATTATATTCAGAATGAAGAAGAAATAGCTACACTTTTATATACAAAAGTTGAAAACCAAACTTTGGTGGAGATGTTGGATCCAAGACTTGGCTTCAAATCAGACATTAGGATCAACAAGATGATGACTGATACCGCTGAGCTTGCATTTTGGTGTTTGCAATGTCCACAAGAATTAAGGCCAGACATGGAACAAGTGCTAGAGACTCTCAATGGCATAAAGCAAGGGAGATATGAGATAAACCCAATACAAGCTTTCAAAATCTTCCACCATGCCGAACTTGAAAAAGCTACAAACCATTTTGACACTTTACTGGGGCGAGGAGGGTTCGGCAAAGTCTTCTATGGAAAACTTAAAGACGGTAGAGAAGTTGCAGTAAAACGTTTCTATGAAGAAACAGATAAAACCGTTGGGCAATTCATGAAAGAAATTGATATCTTAAGTCGCTTGCATCATCAAAATCTGGTTTTACTTTATGGTTGCAGTTCTCGCCATAGCAACAAACACATGCTAGTGTATGAGTACATCGCTAATGGAACTCTTTCACAGCATCTTCGTGGATCTTCAATTAGTAAACTATCATGGCTTACTAGATTGAATATTGCTATTGAAACTGCAAAGGCCTTGGTATATCTTCACGGCTCGGGTATCATTCATCGGGACATAAAAGGAAGCAATATTCTGCTTGATGAAAATTTTAATGTTAAAGTTGCAGATTTTGGACTCGCAAGGTTTCTTCCGGACTATCTTACTCATGTTTTGTAA 1488 0.3757 MGWDPCMLCCCFTSSSDTFPDQSKLKWQIFPYKQLTKATNYFNQGRILDKKSFATTYYGKLKNGREIAVQSYNEDKCNILKQFINETVILNCMPHKNLVTIYGCATHQKESLLVLEYMSNGTLAAHIQSQISESRTTLNWHYRLDMAIDIANALDHLHHNGIVHRNVKSHNIFLDINFCAKLSNFYQSKKLDDETHVTRGVIGTGGYIDPELVSKGLLCVKNDVYSFGVVLCELMSSKLAEYYIQNEEEIATLLYTKVENQTLVEMLDPRLGFKSDIRINKMMTDTAELAFWCLQCPQELRPDMEQVLETLNGIKQGRYEINPIQAFKIFHHAELEKATNHFDTLLGRGGFGKVFYGKLKDGREVAVKRFYEETDKTVGQFMKEIDILSRLHHQNLVLLYGCSSRHSNKHMLVYEYIANGTLSQHLRGSSISKLSWLTRLNIAIETAKALVYLHGSGIIHRDIKGSNILLDENFNVKVADFGLARFLPDYLTHVL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03839 495 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Trre3g03839 495 Gene3D Transferase(Phosphotransferase) domain 1 417 493 - -
Trre3g03839 495 ProSiteProfiles Protein kinase domain profile. 340 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03839 495 SUPERFAMILY Protein kinase-like (PK-like) 322 492 IPR011009 -
Trre3g03839 495 Gene3D Transferase(Phosphotransferase) domain 1 118 326 - -
Trre3g03839 495 ProSiteProfiles Protein kinase domain profile. 42 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03839 495 SMART serkin_6 340 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03839 495 SMART serkin_6 42 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03839 495 Gene3D Phosphorylase Kinase; domain 1 17 117 - -
Trre3g03839 495 Gene3D Phosphorylase Kinase; domain 1 327 416 - -
Trre3g03839 495 SUPERFAMILY Protein kinase-like (PK-like) 20 316 IPR011009 -
Trre3g03839 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Trre3g03839 495 Pfam Protein tyrosine and serine/threonine kinase 342 487 IPR001245 GO:0004672|GO:0006468
Trre3g03839 495 Pfam Protein tyrosine and serine/threonine kinase 45 311 IPR001245 GO:0004672|GO:0006468
Trre3g03839 495 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 22 319 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03839 Trre-Chr3 49499342 49502058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03839 329 494 Receptor kinase-like Gene Family AT1G25390 61.404 2.47e-62 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trre3g03839 PK_Tyr_Ser-Thr 7e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03839 - - mtr:25496807 670.233