Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03836 ATGGAGATTTTCAAATTCTTCTTCTACTTCATTAATCTTCTCTTTGCTTTCATCTTAACATCATCATCTTTAGCAATTGATCCTTACTCAAAAGCACTCCTAAGTCTAAAATCTGAGCTTATAGATTATGATAATACCTTACATGACTGGATGGTGACATCAAATGGAAATTCCTATGCATGTTCTTGGTCTGGCATAAAGTGTAACAAGGACTCAATTGTAATTTCAATAGACCTTTCCATGAAGAAACTTGGAGGTATACTATCAGGTAACCAATTAAGTATCTTCACAAATGTTACTGATTTCAACATAAGCTATAATTTCTTCTCTGGTAAACTTCCACAAGAAATTTTCAACCTCACTAGCTTAAAAAGCTTGGATATAAGCAGAAACAATTTCTCAGGTCAATTTCCAAAAGGAATTCCTAAACTCAAAAACTTGGTTGTACTTGATGCTTTTAGTAACAGCTTTTCAGGTGAATTACCATATGAATTTTCAGAATTGGATAATCTTAAGATTCTTAATCTAGCTGGTAGTTACTTCAGTGGAACAATTCCATCTGAATATGGTTCTTTCAGAAAACTTGAGTTTCTTCATTTAGCTGGAAATTCTCTATCTGGAAGTATACCTTCAGAACTTGGTAACCTCGAAACAGCGACACATATCGAGATCGGTTATAACTTTTATCAGGGTCTCATTCCACCTCAGCTAGGTAATTTGAGCCAGCTTCATTATCTTGATATAGCTGGTGCAAATCTATCTGGATCAATTCCAAAGGAATTTTCAAACCTCACAAGTTTACAATCACTTTTTCTTTTCAGAAACCAACTCACAGGTTCAATACCAAGTGAGTTGAGCAATATTAAACCTCTCACAAATTTAGATCTTTCTGATAATTTCCTTTCAGGGTCAATTCCCGAAAGCTTTTCCGAGCTGAAAAGTTTAAGACTTCTTAGTCTTATGTATAATGACATGAGTGGAACTGTTCCTGATGGAATTGCAGAACTAAGTTCATTGGAAACTCTACTCATTTGGAATAATCACTTCTCTGGATTACTTCCGAAGAGTTTAGGTAAAAACTCGAAACTCAAGTGGGTGGATGTTTCCACAAACAAATTCAATGGCAGTATACCACAAGACATTTGTCGAGGTGGAGTACTGTCGAAGCTAATCCTGTTTTCGAACAAATTCACAGGTAGTCTTTTCTCAATCTCGAATTGTTCTTCACTTGTTCGACTTCGTCTAGAAAATAATTCATTCTCCGGTGAAGTCTCTTTAAAATTCAGCCATCTTCCTGATATCACATATGTTGATTTGTCATGGAACAATTTTGTTGGTGGGATTCCCTTGGATATTTCTCAAGCTACTCAATTGGAGTATTTTAATGTCTCTTATAATAACCAATTAGGAGGCATAATCCCTACATTAATATGGTCTTTGCCGCAACTACAAAATTTCTCGGCATCTTCTTGTGGTATTCTCGGCATTCTTCCTTCATTTGACTCCTGCAAATCAATTTCAACAATCGATCTTGGTAGAAACAACTTATCTGGTACAATCTCAAAAAGTGTTTCGAAATGTCAAGCTCTTGTGACAATCGATTTGTCTGACAATAATATGACGGGTCAAATACCCGAGGAGCTTGCAAGTATCCCTATTCTTGAAATTGTAGATTTATCTAACAACAAGTTCAATGGCCCTATACCTGAAAAGTTTGGTAGTTCATCAAGTTTACATCTTCTCAATGTGTCTTTCAACAATATCTCAGGTTCAATACCAAATGCAAAGACATTTAAAATAATGAATGAAAGTGCATTTGTTGGAAACTCGGAGCTATGCGGAGGACCTCTAAGACCATGTTTTGGGAGAGTAGGAACTTGGAAGCTTAAACATATTTTGTTACTCTCTGTAGGGTTGCTAATAATCCTTATGGTATTGGCTTTTGGAATACTTCATTACAGAAAGGAATATAAAAGTCAATGGAAAATGGTTTCATTTGTCGGACTTCCTCAATTCACAGCGAATGACGTCTTGACAAGCTTCAGTGTGGTTGCCACGGAACATACACATATTCCGTCATCACCATCACCTGTAGTTACAAAGGCGGTTCTTCCAACAGGTATAACAGTATTGGTCAAGAAGATTGAATTGGAAAATAGGAGCATCAATGCGGTGTCGGAATTTATAACGAGACTAGGAAATGCAAGACACAAGAATTTAATCAGATTGTTGGGTTTTTGCCACAACCAACAACTAGTTTACCTTTTGTATGATTACTTGCCAAATGGAAACTTGGCCGAGAAAATCGGAATGAAATGGGATTGGTCAGCTAAATTCAGAACAGTGGTCGGAATTGCAAGGGGACTATGCTTTCTTCACCATGAATGTTACCCGGCTATACCCCACGGAGACTTGAAATCTAGCAACGTTGTATTCGATGAAAATATGGAACCCCATTTGGCTGAATTCGGGTTTAAACAAGTCTTACAGTTGACCAATGGCTCATCTCCGACTAAAACTATGCAGGAAACAGAATACAATGAAGTAATGAAAGAGGAACTCAGCAATGATGTCTACAATTTTGGAAAGATGATTCTAGAAATTTTAACCGGCGGAAAGTTGACAAGTGCAGCAACCAACATTCACAGCAATTCGCAGGAGGTTCTTCTAAGAGAAGTTTACAATGGTAATGAAGTGACCTCTGTTGATTCAATGCAAGAGATTAAACTGGTTATTGAGGTTGCTATGCTTTGCACGAAAAGCAGATCATCCGATCGTCCATTCATGGAAGATGCTCTGGAGCTTCTGTCAGGGTTAAAATGTTTAGAAAATGATGAAAGTTCTAAATAA 2850 0.3688 MEIFKFFFYFINLLFAFILTSSSLAIDPYSKALLSLKSELIDYDNTLHDWMVTSNGNSYACSWSGIKCNKDSIVISIDLSMKKLGGILSGNQLSIFTNVTDFNISYNFFSGKLPQEIFNLTSLKSLDISRNNFSGQFPKGIPKLKNLVVLDAFSNSFSGELPYEFSELDNLKILNLAGSYFSGTIPSEYGSFRKLEFLHLAGNSLSGSIPSELGNLETATHIEIGYNFYQGLIPPQLGNLSQLHYLDIAGANLSGSIPKEFSNLTSLQSLFLFRNQLTGSIPSELSNIKPLTNLDLSDNFLSGSIPESFSELKSLRLLSLMYNDMSGTVPDGIAELSSLETLLIWNNHFSGLLPKSLGKNSKLKWVDVSTNKFNGSIPQDICRGGVLSKLILFSNKFTGSLFSISNCSSLVRLRLENNSFSGEVSLKFSHLPDITYVDLSWNNFVGGIPLDISQATQLEYFNVSYNNQLGGIIPTLIWSLPQLQNFSASSCGILGILPSFDSCKSISTIDLGRNNLSGTISKSVSKCQALVTIDLSDNNMTGQIPEELASIPILEIVDLSNNKFNGPIPEKFGSSSSLHLLNVSFNNISGSIPNAKTFKIMNESAFVGNSELCGGPLRPCFGRVGTWKLKHILLLSVGLLIILMVLAFGILHYRKEYKSQWKMVSFVGLPQFTANDVLTSFSVVATEHTHIPSSPSPVVTKAVLPTGITVLVKKIELENRSINAVSEFITRLGNARHKNLIRLLGFCHNQQLVYLLYDYLPNGNLAEKIGMKWDWSAKFRTVVGIARGLCFLHHECYPAIPHGDLKSSNVVFDENMEPHLAEFGFKQVLQLTNGSSPTKTMQETEYNEVMKEELSNDVYNFGKMILEILTGGKLTSAATNIHSNSQEVLLREVYNGNEVTSVDSMQEIKLVIEVAMLCTKSRSSDRPFMEDALELLSGLKCLENDESSK 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03836 949 Gene3D Ribonuclease Inhibitor 291 624 IPR032675 -
Trre3g03836 949 PANTHER UNNAMED PRODUCT 13 875 - -
Trre3g03836 949 FunFam Leucine-rich repeat receptor-like protein kinase 26 187 - -
Trre3g03836 949 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Trre3g03836 949 FunFam Leucine-rich repeat receptor-like protein kinase TDR 309 621 - -
Trre3g03836 949 Pfam Protein tyrosine and serine/threonine kinase 706 934 IPR001245 GO:0004672|GO:0006468
Trre3g03836 949 FunFam Leucine-rich repeat receptor-like protein kinase TDR 672 759 - -
Trre3g03836 949 SUPERFAMILY Protein kinase-like (PK-like) 697 936 IPR011009 -
Trre3g03836 949 Gene3D Phosphorylase Kinase; domain 1 685 757 - -
Trre3g03836 949 Pfam Leucine Rich Repeat 291 312 IPR001611 GO:0005515
Trre3g03836 949 Gene3D Transferase(Phosphotransferase) domain 1 758 948 - -
Trre3g03836 949 SUPERFAMILY RNI-like 76 399 - -
Trre3g03836 949 SMART serkin_6 698 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03836 949 FunFam Leucine-rich repeat receptor-like protein kinase TDR 760 944 - -
Trre3g03836 949 ProSiteProfiles Protein kinase domain profile. 661 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03836 949 SMART LRR_typ_2 264 288 IPR003591 -
Trre3g03836 949 SMART LRR_typ_2 336 359 IPR003591 -
Trre3g03836 949 SMART LRR_typ_2 120 144 IPR003591 -
Trre3g03836 949 SMART LRR_typ_2 192 216 IPR003591 -
Trre3g03836 949 Gene3D Ribonuclease Inhibitor 29 183 IPR032675 -
Trre3g03836 949 Gene3D Ribonuclease Inhibitor 184 289 IPR032675 -
Trre3g03836 949 SUPERFAMILY L domain-like 309 613 - -
Trre3g03836 949 ProSitePatterns Serine/Threonine protein kinases active-site signature. 800 812 IPR008271 GO:0004672|GO:0006468
Trre3g03836 949 FunFam Leucine-rich repeat receptor-like protein kinase 188 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03836 Trre-Chr3 49477106 49480075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03836 8 937 Receptor kinase-like Gene Family AT5G51350 53.749 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre3g03836 PK_Tyr_Ser-Thr 1.7e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03836 - - aprc:113852384 1401.34