Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03830 ATGCCAATTTTCTCGTCTTTATGTCAATGTTTTTCCCCTGACGAAAAAACTAGAAAGGAAAACAACCCTTCATTTCCAAAAGGTTTTGAGAAAAATGATAGAAGTTCGATGACAGCGAGTTCTAAGAAGCTGATAAGAAATGATGATCAAATGGTATCTGTTGATTCGAAGGTCGCAAACAAATGTAATGAATCAGTTCTTGTGAATGTTAATTCTGAGTTGCCAAATAGTGATGTTGGTCAATCGATGTTGATTGATTCTGAGGTGCCGAATAGCCAATGCGATATTAGTGAGATATTTAAGTATTCTGAACTTGAAGAAGCTACTGATAAATTTGACACTAGTAGAATACTTGGGAGTGGAGGCTATGGAACAGTTTACTCTGGAACACTTAAAGATGGGCGTCTTGTTGCAATAAAGCGCATAAGGTTACATGATAAGAAGCTTGAAGAGGAGACACTAAGAAAGTTCATCAATGAAGTTTCAATGTTAACTCGCATGAGGCATGAAAATCTTGTCCAACTGTATGGCTGCACCTCTCCTCGAACCCGTGAACTACTTCTCGTGCAAGAATATGTTCCCAATGGAACCTTGGCTCGCCGTCTTCATAAAGATACCTTGCCGTGGTCAACTCGACTAAATGTTGCGGTACAAACTGCAAGTGCTTTAGCTTATCTTCATGCTTCCAATGTTATCCACCGTGACGTGAACACCAGTAATATTCTACTTGACAGAAATTTGAATGCTAAAGTTGCAGACTTTGGATTGTCGCGCCCTGTCCCGAATGGTGCTACACACATCACAACCGATCCTGCGGGAACTCGAGGTTATATTGATCCGGAGTATTACGAACATTGTCATCTTTCTGATAAAAGTGATGTTTACAGCTTTGGAGTGATATTGGTCGAGTTGATTTCATCTTTGCCCGCATATAGCGAAGATGAAAAACAACCTTTTCTTTCGGATTTCGCTATGGATAAAATCCTCAACGGAAAACTCGAAAAGCTTGTCGACCCGAATCTTGGATTTCAATCAGACAATTGGATAAGTGAAACAGTAAGTGCAGTAGCAGAGTTGGCATTTGGATGTTTACAACCTCAAAGAAACATGAGACCTTTCATGAGTGAAGTGTTGAACACTCTTGAGAGCATAAAAAGTGGAAGCTCTCAAAAAGCTCTTAAATGTGGTTCAAATCATTGTTATAATGCTACCAAAGTTCACATTGTGTCACGTTTGCCTGATGATTATTTTGAGAAGAAATAG 1263 0.3935 MPIFSSLCQCFSPDEKTRKENNPSFPKGFEKNDRSSMTASSKKLIRNDDQMVSVDSKVANKCNESVLVNVNSELPNSDVGQSMLIDSEVPNSQCDISEIFKYSELEEATDKFDTSRILGSGGYGTVYSGTLKDGRLVAIKRIRLHDKKLEEETLRKFINEVSMLTRMRHENLVQLYGCTSPRTRELLLVQEYVPNGTLARRLHKDTLPWSTRLNVAVQTASALAYLHASNVIHRDVNTSNILLDRNLNAKVADFGLSRPVPNGATHITTDPAGTRGYIDPEYYEHCHLSDKSDVYSFGVILVELISSLPAYSEDEKQPFLSDFAMDKILNGKLEKLVDPNLGFQSDNWISETVSAVAELAFGCLQPQRNMRPFMSEVLNTLESIKSGSSQKALKCGSNHCYNATKVHIVSRLPDDYFEKK 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03830 420 ProSiteProfiles Protein kinase domain profile. 112 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03830 420 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 50 392 IPR044652 GO:0004672
Trre3g03830 420 Pfam Protein kinase domain 113 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03830 420 ProSitePatterns Protein kinases ATP-binding region signature. 118 140 IPR017441 GO:0005524
Trre3g03830 420 MobiDBLite consensus disorder prediction 28 45 - -
Trre3g03830 420 MobiDBLite consensus disorder prediction 15 45 - -
Trre3g03830 420 SUPERFAMILY Protein kinase-like (PK-like) 91 382 IPR011009 -
Trre3g03830 420 Gene3D Transferase(Phosphotransferase) domain 1 193 405 - -
Trre3g03830 420 Gene3D Phosphorylase Kinase; domain 1 84 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03830 Trre-Chr3 49394895 49397024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03830 99 386 Receptor kinase-like Gene Family AT1G25390 54.054 1.77e-105 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trre3g03830 Pkinase 3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03830 - - tpra:123887372 699.123