Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03823 ATGAAATGGAGAAGACCCAGAAACAAATTAAGACACCCCAATTCAGAAACTGATCCAAGTTCACAACTTTCTTCTTTAATCCAATCCACTTCTTGCAAATCCACAATCACCACTCTCTTTTCCACTTTCTCAAACAACACATCCAATGAAACCACACATGACAGTAACCAAAACAGAACAAAAAAGAGCAACAGCAAAAACATTAACAATGGTAATAACTTTTCTGCAGCAACCTTCAGAGGACTCGGCTGCACAGCCGGTACATCTCAACAGGTGTCTGTACCGGCTGTGAATCGATGCTCTGTAGATTGGCAAGGTAAAAAGAATAGAAAAAAGAAACATAGAAAGAACAGCAACAAAACATGTCATGGTGTTGATGATGTAGATTTTCAGGATGTTTGGTGTGGACCAGGAATTGGGTTTTCATCTGATGTTGCTGATGTTTCTATGGATTGTGTTGTTGCAAGAAAGAATGTTTCTTCAAGAGGAAAACTTGATAATGGGGAAAGAGTAACACATAGGGAGCGTTCATCTTATTTTGGAAGAAGAAATTTAAATCAAGAAAATTTATCATCTTTAGATGATGATTCTGATGTGTTCACATCACGTCATGGATTAGAATCTTTTGGCAATAGTAGATTCTATAGAAATTCTTCACGTGTTTCATCTGATGGTCTTGCTGAGATAATGATAATTCAAGGAGCAAGATTAATGGGGGCACAATTAAGTTCACGTGACCAATTTAGAGATTGGAGACTTGATGTTGATAATATGTCATATGAGCAATTGCTTGAGCTAGGCGAAAGAATTGGTTATGTGAAAACAGGACTTAAAGAAGATGAGATGAAACACAGCATAAAGAAAATGAAGTTTTTGATTTCAAAAGATACACTAAAGCATCAAATAGACAAAAAGTGCACCATTTGTCAAGAGGAGTATGAATTAGATGATGAATTGGGGAGATTAAAGTGTAAACATTGCTATCATTTTCAGTGTATAAAACAATGGCTTGTGCTTAAAAACTTCTGTCCAGTATGTAAGCAAGAAGTCGCGGTTCGACACTGA 1065 0.3643 MKWRRPRNKLRHPNSETDPSSQLSSLIQSTSCKSTITTLFSTFSNNTSNETTHDSNQNRTKKSNSKNINNGNNFSAATFRGLGCTAGTSQQVSVPAVNRCSVDWQGKKNRKKKHRKNSNKTCHGVDDVDFQDVWCGPGIGFSSDVADVSMDCVVARKNVSSRGKLDNGERVTHRERSSYFGRRNLNQENLSSLDDDSDVFTSRHGLESFGNSRFYRNSSRVSSDGLAEIMIIQGARLMGAQLSSRDQFRDWRLDVDNMSYEQLLELGERIGYVKTGLKEDEMKHSIKKMKFLISKDTLKHQIDKKCTICQEEYELDDELGRLKCKHCYHFQCIKQWLVLKNFCPVCKQEVAVRH 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03823 354 ProSiteProfiles Zinc finger RING-type profile. 306 347 IPR001841 -
Trre3g03823 354 Pfam Ring finger domain 305 347 IPR001841 -
Trre3g03823 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 352 IPR013083 -
Trre3g03823 354 SMART ring_2 306 346 IPR001841 -
Trre3g03823 354 MobiDBLite consensus disorder prediction 43 72 - -
Trre3g03823 354 MobiDBLite consensus disorder prediction 1 25 - -
Trre3g03823 354 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 36 350 IPR045191 GO:0061630
Trre3g03823 354 SUPERFAMILY RING/U-box 305 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03823 Trre-Chr3 49306579 49312179 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03823 77 261 C3H Transcription Factor Family AT1G73760 43.396 4.24e-39 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03823 - - gmx:100818517 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g03823 3 49306579 49312179 Trre7g05926 7 63770075 63773359 ECH
Trre3g03823 3 49306579 49312179 Trre3g03823 3 49306579 49312179 ECH