Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03822 ATGCCAGTTATCACAGGACACATGAAATGGAGAAGACCCAGAAACAAATTAAGACACCCCAATTCAGAAACTGATCCAAGTTCACAACTTTCTTCTTTAATCCAATCCACTTCTTGCAAATCCACAATCACCACTCTCTTTTCCACTTTCTCAAACAACACATCCAATGAAACCACACATGACAGTAACCAAAACAGAACAAAAAAGAGCAACAGCAAAAACATTAACAATGGTAATAACTTTTCTGCAGCAACCTTCAGAGGACTCGGCTGCACAGCCGGTACATCTCAACAGGTGTCTGTACCGGCTGTGAATCGATGCTCTGTAGATTGGCAAGGTAAAAAGAATAGAAAAAAGAAACATAGAAAGAACAGCAACAAAACATGTCATGGTGTTGATGATGTAGATTTTCAGGATGTTTGGTGTGGACCAGGAATTGGGTTTTCATCTGATGTTGCTGATGTTTCTATGGATTGTGTTGTTGCAAGAAAGAATGTTTCTTCAAGAGGAAAACTTGATAATGGGGAAAGAGTAACACATAGGGAGCGTTCATCTTATTTTGGAAGAAGAAATTTAAATCAAGAAAATTTATCATCTTTAGATGATGATTCTGATGTGTTCACATCACGTCATGGATTAGAATCTTTTGGCAATAGTAGATTCTATAGAAATTCTTCACGTGTTTCATCTGATGGTCTTGCTGAGATAATGATAATTCAAGGAGCAAGATTAATGGGGGCACAATTAAGTTCACGTGACCAATTTAGAGATTGGAGACTTGATGTTGATAATATGTCATATGAGCAATTGCTTGAGCTAGGCGAAAGAATTGGTTATGTGAAAACAGGACTTAAAGAAGATGAGATGAAACACAGCATAAAGAAAATGAAGTTTTTGATTTCAAAAGATACACTAAAGCATCAAATAGACAAAAAGTGCACCATTTGTCAAGAGGAGTATGAATTAGATGATGAATTGGGGAGATTAAAGTGTAAACATTGCTATCATTTTCAGTGTATAAAACAATGGCTTGTGCTTAAAAACTTCTGTCCAGTATGTAAGCAAGAAGTCGCGGTTCGACACTGA 1086 0.3665 MPVITGHMKWRRPRNKLRHPNSETDPSSQLSSLIQSTSCKSTITTLFSTFSNNTSNETTHDSNQNRTKKSNSKNINNGNNFSAATFRGLGCTAGTSQQVSVPAVNRCSVDWQGKKNRKKKHRKNSNKTCHGVDDVDFQDVWCGPGIGFSSDVADVSMDCVVARKNVSSRGKLDNGERVTHRERSSYFGRRNLNQENLSSLDDDSDVFTSRHGLESFGNSRFYRNSSRVSSDGLAEIMIIQGARLMGAQLSSRDQFRDWRLDVDNMSYEQLLELGERIGYVKTGLKEDEMKHSIKKMKFLISKDTLKHQIDKKCTICQEEYELDDELGRLKCKHCYHFQCIKQWLVLKNFCPVCKQEVAVRH 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03822 361 SUPERFAMILY RING/U-box 312 358 - -
Trre3g03822 361 MobiDBLite consensus disorder prediction 50 79 - -
Trre3g03822 361 MobiDBLite consensus disorder prediction 1 33 - -
Trre3g03822 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 359 IPR013083 -
Trre3g03822 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 43 357 IPR045191 GO:0061630
Trre3g03822 361 SMART ring_2 313 353 IPR001841 -
Trre3g03822 361 Pfam Ring finger domain 312 354 IPR001841 -
Trre3g03822 361 ProSiteProfiles Zinc finger RING-type profile. 313 354 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03822 Trre-Chr3 49306579 49312200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03822 4 268 C3H Transcription Factor Family AT1G73760 38.435 1.15e-39 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03822 - - gmx:100818517 453.751