Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03811 ATGTCTGAGCTGTGTCTAAACTTCAGGAGGCAGGCAATCGAAAACTCTAGTCAGTCTCTATACGAGGGCTGCACTCTAATTTCCATAGCCCAAAATTCGGGCTTTGTCACAGCTCAAAAGCGCCAAGGTTTGATTGCTGACACTGGGTTTTCAATATTAAACAGCAAAGTAGTAGGATGTGGACAAGTTTATTTGGGAAGACCATGGGGAGATTACTCGAGAGTAATTTTTTCCTACACCTACATGGATAATCTGGTTCTCCCTGAAGGATGGGTCGACAGTATGGGCGACGGACACCACCATAACTTGACCGTATTCTATGCAGAATATAAGTGCAGTGGTCCGGGATCATGCTTTGCTAGAAGACCTAGCTGGATACGGAGATTGTCGGACAAAGATGCCCAAGAATTTATCGGAGTCCAATTCATTCATGGGGATACTTGGCTTAGCCCACCATTGTGA 462 0.4524 MSELCLNFRRQAIENSSQSLYEGCTLISIAQNSGFVTAQKRQGLIADTGFSILNSKVVGCGQVYLGRPWGDYSRVIFSYTYMDNLVLPEGWVDSMGDGHHHNLTVFYAEYKCSGPGSCFARRPSWIRRLSDKDAQEFIGVQFIHGDTWLSPPL 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03811 153 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 15 150 - -
Trre3g03811 153 Gene3D - 11 152 IPR012334 -
Trre3g03811 153 Pfam Pectinesterase 30 146 IPR000070 GO:0030599|GO:0042545
Trre3g03811 153 SUPERFAMILY Pectin lyase-like 13 151 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03811 Trre-Chr3 49206677 49208418 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03811 13 149 Carbohydrate Esterase AT1G05310 37.931 9.64e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03811 K01051 - tpra:123885915 210.305