Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03784 ATGAACGAATTTGCTGAGACTCACAAACGCGAAGCTGATTCAGAAAACAAGGAGGAAATTTCTGCATCGAAGAAGTTAAGGGTTGAATCTTCGGAAGAAAATGCTTCAAAGGAACTATCTTTTCTCATTGAAGCGGATGCTGCTGAAGATAAAGGGTTGAGACATTCCATGGAAGATGAATGGGTTGTTCTTCTCGATGCTGCTCGAGATTACCCTGGAAATTTGAGGTGTGCTCACTTTGCAATTTATGATGGACACGGGGGCCGGTTAGCTGCCGAATATGCTCAAAAGCATTTGCATGAAAATGTTCTCGCAGCAGGATTACCACGTGAGTTGTTGGATGTAAAGACTGCTAAAAGATCTATACTTGATGGTTTTCGAAAAACTGATGAGTCTCTTCTTCGAGAAAGTTCTGAAGGGGGATGGCAGGACGGTGCTACAGCTGTATGTGTCTGGGTATTGGGCCAAAAAGTTTTTGTTGCAAATGTAGGAGATGCTAAAGCCGTTTTAGCTCGGGCAACTTTATCTGATGGATCCCAGGATAACTCAGATAAAGTACCTGCTCTCAAGGCCATTGTTTTGACAAGAGAACACAAATCTATATTCCCACAGGAGCGAGCACGCATTCAGAAGGCTGGTGGTGTTGTGAGCTCAAATGGACGATTACAAGGGCGTCTAGAAGTATCTAGGGCTTTCGGAGATCGCCAGTTCAAAAAGGTGGGTCTTGTTGCAACCCCAGATATCCATTCTTTTGACCTTACTGATAGAGATCATTTCATCATTCTTGGTTGTGATGGTTTGTGGGGGGTATTTGGACCCAGTGATGCTGCTGATTTTGTTCAGAAGTTATTGAATGAGGGACTGCCTGTAACAACTGTGAGCCGCCGTCTTGTTAGAGAAGCTGTTCGTGAGCGTCGCTGCAAAGATAACTGCACTGCAATTGTCATTGCATTCAAGCGTAATTAA 966 0.44 MNEFAETHKREADSENKEEISASKKLRVESSEENASKELSFLIEADAAEDKGLRHSMEDEWVVLLDAARDYPGNLRCAHFAIYDGHGGRLAAEYAQKHLHENVLAAGLPRELLDVKTAKRSILDGFRKTDESLLRESSEGGWQDGATAVCVWVLGQKVFVANVGDAKAVLARATLSDGSQDNSDKVPALKAIVLTREHKSIFPQERARIQKAGGVVSSNGRLQGRLEVSRAFGDRQFKKVGLVATPDIHSFDLTDRDHFIILGCDGLWGVFGPSDAADFVQKLLNEGLPVTTVSRRLVREAVRERRCKDNCTAIVIAFKRN 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03784 321 SUPERFAMILY PP2C-like 40 319 IPR036457 -
Trre3g03784 321 CDD PP2Cc 48 318 IPR001932 -
Trre3g03784 321 SMART PP2C_4 40 316 IPR001932 -
Trre3g03784 321 Gene3D - 23 320 IPR036457 -
Trre3g03784 321 PANTHER PROTEIN PHOSPHATASE 2C 26 316 IPR015655 GO:0004722|GO:0006470
Trre3g03784 321 MobiDBLite consensus disorder prediction 1 34 - -
Trre3g03784 321 FunFam Probable protein phosphatase 2C 67 32 320 - -
Trre3g03784 321 ProSiteProfiles PPM-type phosphatase domain profile. 44 318 IPR001932 -
Trre3g03784 321 Pfam Protein phosphatase 2C 48 306 IPR001932 -
Trre3g03784 321 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03784 Trre-Chr3 48880894 48887016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03784 41 270 PP2C-type Phosphatase Gene Family AT1G18030 74.783 1.35e-130 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03784 K17500 - mnt:21396468 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g03784 3 48880894 48887016 Trre3g03784 3 48880894 48887016 ECH