Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03764 ATGGTTGTTGTTCCTTCTTCTCTTCAAATATCCAAACGAAGAAGAATCACCAACGTTTATTCCATGGCAACAATTGCAGAGATGCATGAAAAATTTGGGCGAGAGATTCGTGTTTTTGAAACATCATCACTTTCTGCATCACCAAATGCTGCAGAAAACAAAGAAGAGGAGCCTGAAGAGTTCTACGAGTTCACAGCTGAAGATTATTACAAAATTTTGGCTACTAAAAAGGATGATAAATTTCTGAAGACTCGAAAACTCCGAGAAGCAGATGCAGCAGCTCGCAGGTCAAGAATGACCAAGGCTGGAATTAGAGTTCGCTTCCCTGATAATCATACATTGGAAGCTACTTTTCAACCTTCGGACACTATCCAGAGTTTAATTGATCTCCTGAATAAAGTGATTGCACAACCAGAGAAGCCATTTTACTTATATACTACTCCGCCGAAGAAGCTGATCAAAGATGTATCTCAGGATTTCTATGCTGCTGGATTTTGTCCTGGAGCCATCGTGTACTTTTCATATGATGTTTCAAAAGGTGACGGAAGCGATGATGGCCCTTACCTACGAGAAGAGGTGATGTCTTTGAAGACTGCTAATGATCAAGGTCAGCCATCTGAGCCATTACAGTCTGCAACGGTGTCTGCTGAGCCTGTCGTGCAAGCTCCTGCTGTTGAAGAGCGAAAACCGTCTGAGAAAAAGCTTGTTAAGCCAAAGTGGTTGAAAATGTAA 732 0.418 MVVVPSSLQISKRRRITNVYSMATIAEMHEKFGREIRVFETSSLSASPNAAENKEEEPEEFYEFTAEDYYKILATKKDDKFLKTRKLREADAAARRSRMTKAGIRVRFPDNHTLEATFQPSDTIQSLIDLLNKVIAQPEKPFYLYTTPPKKLIKDVSQDFYAAGFCPGAIVYFSYDVSKGDGSDDGPYLREEVMSLKTANDQGQPSEPLQSATVSAEPVVQAPAVEERKPSEKKLVKPKWLKM 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03764 243 MobiDBLite consensus disorder prediction 198 217 - -
Trre3g03764 243 ProSiteProfiles UBX domain profile. 97 173 IPR001012 GO:0005515
Trre3g03764 243 Pfam UBX domain 100 156 IPR001012 GO:0005515
Trre3g03764 243 Gene3D - 31 172 - -
Trre3g03764 243 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 1 3 243 IPR044232 GO:0032984|GO:0051117
Trre3g03764 243 SUPERFAMILY Ubiquitin-like 79 173 IPR029071 -
Trre3g03764 243 CDD UBX2_UBXN9 104 175 - -
Trre3g03764 243 MobiDBLite consensus disorder prediction 198 243 - -
Trre3g03764 243 MobiDBLite consensus disorder prediction 226 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03764 Trre-Chr3 48673079 48676779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03764 12 120 C2H2 Transcription Factor Family AT2G01650 33.913 6.09e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03764 K15627 - gmx:100792947 303.908