Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03752 ATGGTAAAGCTTCAATCACTAACACTTGATGAAAATTATTTCAACACAACTATGCCTAATTGGTTTGATTCTTTGTTTAATCTAAGTATCTTGAGTTTGAAGAAAAATCACTTAAAGGGTTCATTTCCATTTTCACTATGCAAAATCAAGAAACTTCAAGTTATTTCTTTATCACAAAATGAACTCTCTGGTGAATTACATTCTCTCAATACTCTCAATGGTTTACATGTTTTGGATTTGAGAGAAAATCATTTCGAATTTGAACTACCGGTTCTTCCTAAATCCGTGGTCACGGTTTTGTTAAGCAATAACTCGTTCTACGGAGAGATACCGAATAAGTTCCGAGAATTGAATCATCTTCAACATTTAGACCTTTCTTCGAATCGTCTTAAGGGCACACCGCCATCGGCTTTGTTCTCTTTGTCGAGTTTAAGTTACTTGAATCTAGCAAACAATGGGCTAAGTGGAGAATTTTCGGATAAACTTCATTGCGGCGGAAAACTTGGTTATGTTGATATTTCTAGCAACAAGTTAAGTGGTTTACTTCCTTCTTGTTTGGTTAATAGTTCTAATGGTAGAGTTGTTAGATATGCTAGAAATTGTTTATCTTTTGAGTATAAGAATCAACAAAGAGGTTCTTATTGTAAGGAATCAAGTTTAAGATGGAAGAAATTCAAGGAATGGGAAGTGATTGCATTAGGGGCTATCATTGTTGGATTTGTTCTTGTGCTTTTGGTGTTTGGAGTTTTGTTATGTAAAAAATGTGATTTGAGAAAGAAAAATAGACATGATTTGTTGCCGAATTTTGTTCAAGATAAGTCCGCAGCCGGTGTTTCATCAGAAGTTCTTGCAAATGCAAGATTTATTTCACAAGCAGTTAAGCTAGGGACACAAACTATTCCAAACTGTCGACAATTTTCGATTCAAGAGTTGAAGGAAGCCACCAAAAACTTTAGTTTGTCAACTTGTATTGGTGATGGCTCCATAGGGAAGCTGTATAAAGGTAAACTAGAGAATGAATGTTATGTGATGATAAGAACTTTGGTTCTGTCAAAGAAATGTTCAATTCAAAATCTTAAAGCTAAGTTGGATTTACTCTCAAAGCTTCAACATCCAAATTTGGTTAGTCTTTTGGGTCATTGCATTGATGGTGGTGTACAAGATAATTCAAGCACCCAAAAACTTCATCTTGTATATGAATATGTGCCAAATGGTGATTATCATTCTCATTTATCAGAATATTCAGCAGAGAAAGCACTTAAATGGCCTGATAGACTGGCGATTTTGATCGGAGTTGCAAAGGCAGTTCATTTCTTACATACCGGTGTTATACCAGGATGTTTTAGCAACCAATTAAAGACAAAGAGTGTGTTACTTGATGAACACTGTATTCCAAAACTAAGTGACTATGGTATGTCCATCATCAAAGAAGATATTGAAAAGTTTGAGACAAAGGGTGAGAAGAAATCAAAATCATGTCAAAGTACAAAAATGGATAATGATGTTTACAATTTTGGATTTATAATGTTGGAATCACTGGTTGGACCTATTACATGTGACAAAGGTGAATCATTTTTCCTAAATGAAAAGGCATCTTTTGGAAGTCAAGATGGAAGAAGAAAGATTGTGGATCCAATAGTGTTGACAACTTGTTCTCAAGAATCATTATCAATTGCAATATCAATCACAACCAAATGTATATCTCAAGATTCTTCATCTCTTCCTTCTTTTGAAGATGTTTTATGGAACTTACAATATGCAGCTCAAGTTCAAGCCACAGCAGATGCAGATCAAAAATCAGATTAA 1806 0.3439 MVKLQSLTLDENYFNTTMPNWFDSLFNLSILSLKKNHLKGSFPFSLCKIKKLQVISLSQNELSGELHSLNTLNGLHVLDLRENHFEFELPVLPKSVVTVLLSNNSFYGEIPNKFRELNHLQHLDLSSNRLKGTPPSALFSLSSLSYLNLANNGLSGEFSDKLHCGGKLGYVDISSNKLSGLLPSCLVNSSNGRVVRYARNCLSFEYKNQQRGSYCKESSLRWKKFKEWEVIALGAIIVGFVLVLLVFGVLLCKKCDLRKKNRHDLLPNFVQDKSAAGVSSEVLANARFISQAVKLGTQTIPNCRQFSIQELKEATKNFSLSTCIGDGSIGKLYKGKLENECYVMIRTLVLSKKCSIQNLKAKLDLLSKLQHPNLVSLLGHCIDGGVQDNSSTQKLHLVYEYVPNGDYHSHLSEYSAEKALKWPDRLAILIGVAKAVHFLHTGVIPGCFSNQLKTKSVLLDEHCIPKLSDYGMSIIKEDIEKFETKGEKKSKSCQSTKMDNDVYNFGFIMLESLVGPITCDKGESFFLNEKASFGSQDGRRKIVDPIVLTTCSQESLSIAISITTKCISQDSSSLPSFEDVLWNLQYAAQVQATADADQKSD 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03752 601 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 96 220 - -
Trre3g03752 601 Pfam Protein tyrosine and serine/threonine kinase 320 512 IPR001245 GO:0004672|GO:0006468
Trre3g03752 601 Gene3D Ribonuclease Inhibitor 93 224 IPR032675 -
Trre3g03752 601 Gene3D Ribonuclease Inhibitor 1 92 IPR032675 -
Trre3g03752 601 Gene3D Phosphorylase Kinase; domain 1 290 401 - -
Trre3g03752 601 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 585 - -
Trre3g03752 601 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 281 401 - -
Trre3g03752 601 PRINTS Leucine-rich repeat signature 141 154 - -
Trre3g03752 601 PRINTS Leucine-rich repeat signature 120 133 - -
Trre3g03752 601 ProSiteProfiles Protein kinase domain profile. 318 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03752 601 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 402 601 - -
Trre3g03752 601 ProSiteProfiles Leucine-rich repeat profile. 119 140 IPR001611 GO:0005515
Trre3g03752 601 Gene3D Transferase(Phosphotransferase) domain 1 402 601 - -
Trre3g03752 601 Pfam Leucine rich repeat 97 154 IPR001611 GO:0005515
Trre3g03752 601 Pfam Leucine rich repeat 3 62 IPR001611 GO:0005515
Trre3g03752 601 SUPERFAMILY Protein kinase-like (PK-like) 299 584 IPR011009 -
Trre3g03752 601 SUPERFAMILY L domain-like 3 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03752 Trre-Chr3 48422300 48425827 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03752 1 532 Miscellaneous Gene Families AT5G14210 53.050 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Trre3g03752 PK_Tyr_Ser-Thr 2.3e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03752 - - gmx:100799183 872.848