Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03730 ATGGAAAACACATCAATGAATGGAAACATGGAGGAAGAAGAATTTGAAAGAGTTGAAGAAAGAGATCCAGAAAGAAATCCAATGAATGAACCTCTTCTAAAGAGAAATAGAACACTTTCTTCAAATCCACTTGCTCTTGTTGGAGCAAAAGTTTCCTACATAGAAAGCTTAGATTACGAGATCAATGAGAATGATTTGTTCAAGCAAGATTGGAGAAGTAGATCAAGATGTCAAGTGTTACAATACATATTCTTGAAATGGTTACTTGCATTCCTTGTTGGACTTCTTACCGGTATTATAGCAACTCTTATCAATCTTGCTGTTGAGAATATTTCAGGGTATAAGCTCCTAGCTGTTGTTGAATACATCCAACAAGAAAGGTACTTGATGGGGTTTCTATATTTCACAGGCACAAATTTCATTTTGACATTCATTGCTTCAATTCTGTGTGTTTGTTTTGCTCCAACTGCTGCTGGACCAGGAATACCTGAAATCAAAGCTTATCTTAATGGTGTTGATACTCCTAACATGTATGGTGCTACAACTTTGTTTGTTAAGATAGTTGGAAGCATAGGAGCTGTCTCAGCAGGTCTAGATTTAGGAAAAGAAGGTCCATTGGTGCACATTGGAAGTTGCATTGCATCCTTGCTAGGCCAAGGAGGTCCAGACAATCATAGAATAAAATGGAAATGGCTAAGATACTTCAACAACGATCGGGACTGTCGCGACTTAATCACGTGCGGAGCTTCTTCGGGGGTTTGTGCGGCTTTCCGAGCACCGGTCGGCGGTGTTCTGTTTGCACTTGAAGAGGTGGCAAGTTGGTGGAGAAGTGCTCTCCTTTGGAGAACTTTTTGTAGCACAGCTGTTGTTGTGGTTGTTCTAAGGGCATTCATTGAACTTTGTCATGAAGGAAAATGTGGTCTTTTTGGTGAAGGAGGTTTGATTATGTTTGATGTTAGTAATGTTTCTGTGAGTTATAATGTTATGGATATTATCCCTGTTGCTATTATTGGAATCCTTGGTGGTGTTTTGGGAAGCCTTTATAACTATCTTCTCCATAAGATCCTTAGGGTTTATAATCTCATCAATCAGAAAGGAAAAATATACAAACTTCTTCTAAGTCTCTCAGTATCAATCTTCACATCAGCATGTCAATATGGTCTACCATTCCTAGTAAACTGCACACCTTGTGAATCATCATCACTTCATGAACAATCTTCATCATGTCCTACAAATGGAAAATCAGGAAACTACAAACAATTCAATTGTCCAAAAGGCCATTATAATGACCTTGCTACCCTTCTACTCACAACAAATGATGATGCAGTTAGAAACATTTTCTCAACAAATACACCTCATGAATACCAACCTTATTCAATCCTAATTTTCTTCACACTCTATTGCATACTAGGTTTAATCACTTTTGGCATTGCTGTTCCATCAGGACTTTTTTTACCTATTATATTAATCGGTTCGGGATATGGTCGTCTCCTCGGAATCTTAATGAAACCTTACACCAACATTGATCATGGTTTGTTAGCTGTTCTTGGTGCAGCTTCATTGATGGCAGGATCAATGAGAATGACTGTGTCACTTTGTGTTATATTTCTTGAATTAACTAATAATCTTCTTTTGCTACCGATAACGATGATTGTTCTTCTCGTAGCGAAAACTGTTGGAGATAGTTTCAATCCAAGTATTTATGAGATTATACTTCATTTGAAAGGCTTACCTTTTATGGATGCTGATCCCGAACCGTGGATGAGAAATTTATCGGTCAGGGAACTAATCGATGTGAAACCATCGGTTGTTAGTTTTCGTGGAGTCGAAAAGGTTGCTAACATTGTTGAGGCCTTGAGGAATACTACACATAATGGTTTTCCAGTGATGGATGATGATGTTGAAGTTGAGATTGTAAAATTGCATGGAGTGATTTTAAGAGCACATTTGATAAAAGTGCTTAAAAAAAAGTGGTTTTTGAAAGAGAAAAGGAGAACTGAGGAATGGGAAGTGAGGGAGAAATTTTCTTGGGTTGAGTTGGCTGAAAGAGAAGGGAATATTGAAGATGTTGCTGTTACAAAAGATGAAATGGAAATGTTTGTTGATCTTCATCCTCTTATTAATACAACTCCTTTTACCGTGTTAGAGAGTATGTCCGTAGCAAAAGCCAGGATCCTTTTCAGACATGTTGGACTTCGTCATATGCTCGTTGTACCGAAGTATCAAGCGACCGGGGTATGTCCTGTAATTGGGATCTTAACAAGGCAGGATCTACTTGCATACAACATTCTATCAGTATTTCCTCACCTAGCAAAATGTAAGGGAAGAGAAAAGAAGAATTGA 2343 0.3803 MENTSMNGNMEEEEFERVEERDPERNPMNEPLLKRNRTLSSNPLALVGAKVSYIESLDYEINENDLFKQDWRSRSRCQVLQYIFLKWLLAFLVGLLTGIIATLINLAVENISGYKLLAVVEYIQQERYLMGFLYFTGTNFILTFIASILCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGATTLFVKIVGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWKWLRYFNNDRDCRDLITCGASSGVCAAFRAPVGGVLFALEEVASWWRSALLWRTFCSTAVVVVVLRAFIELCHEGKCGLFGEGGLIMFDVSNVSVSYNVMDIIPVAIIGILGGVLGSLYNYLLHKILRVYNLINQKGKIYKLLLSLSVSIFTSACQYGLPFLVNCTPCESSSLHEQSSSCPTNGKSGNYKQFNCPKGHYNDLATLLLTTNDDAVRNIFSTNTPHEYQPYSILIFFTLYCILGLITFGIAVPSGLFLPIILIGSGYGRLLGILMKPYTNIDHGLLAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLVAKTVGDSFNPSIYEIILHLKGLPFMDADPEPWMRNLSVRELIDVKPSVVSFRGVEKVANIVEALRNTTHNGFPVMDDDVEVEIVKLHGVILRAHLIKVLKKKWFLKEKRRTEEWEVREKFSWVELAEREGNIEDVAVTKDEMEMFVDLHPLINTTPFTVLESMSVAKARILFRHVGLRHMLVVPKYQATGVCPVIGILTRQDLLAYNILSVFPHLAKCKGREKKN 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03730 780 FunFam Chloride channel ClC3 78 406 - -
Trre3g03730 780 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 18 764 - -
Trre3g03730 780 ProSiteProfiles CBS domain profile. 707 772 IPR000644 -
Trre3g03730 780 PRINTS Plant CLC chloride channel signature 271 279 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre3g03730 780 PRINTS Plant CLC chloride channel signature 303 310 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre3g03730 780 PRINTS Plant CLC chloride channel signature 60 68 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre3g03730 780 PRINTS Plant CLC chloride channel signature 285 295 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre3g03730 780 PRINTS Plant CLC chloride channel signature 431 447 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre3g03730 780 CDD CBS_pair_voltage-gated_CLC_euk_bac 600 761 - -
Trre3g03730 780 MobiDBLite consensus disorder prediction 10 31 - -
Trre3g03730 780 Pfam CBS domain 708 761 IPR000644 -
Trre3g03730 780 Pfam Voltage gated chloride channel 143 560 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre3g03730 780 Gene3D Clc chloride channel 78 582 - -
Trre3g03730 780 MobiDBLite consensus disorder prediction 1 33 - -
Trre3g03730 780 Gene3D - 607 751 IPR046342 -
Trre3g03730 780 SUPERFAMILY CBS-domain pair 585 761 IPR046342 -
Trre3g03730 780 CDD ClC_6_like 55 580 - -
Trre3g03730 780 SUPERFAMILY Clc chloride channel 64 582 IPR014743 -
Trre3g03730 780 PRINTS Chloride channel signature 479 499 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre3g03730 780 PRINTS Chloride channel signature 567 581 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre3g03730 780 PRINTS Chloride channel signature 250 269 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre3g03730 780 PRINTS Chloride channel signature 186 205 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre3g03730 780 PRINTS Chloride channel signature 511 527 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre3g03730 780 PRINTS Chloride channel signature 155 172 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre3g03730 780 PRINTS Chloride channel signature 529 548 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03730 Trre-Chr3 48196716 48203196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03730 10 775 Ion Channels AT3G27170 74.904 0.0 1193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03730 K05016 - gmx:778094 1300.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00666 13 5207501 5211426 Trre3g03730 3 48196716 48203196 PCT