Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03729 ATGGGAGCACCGAAGAAAAGCTCTGCTAGGGTTTCAGAGGATCACGATGAACTTGTTCGTGTTCCGTTACAAGCAATTCTCTTAGCTGATAGTTTCACAACAAAGTTCAGACCTATCACTCTTGAACGTCCCAAAGTGCTATTGCCCTTGGTGAATGCTCCGATGATAAATTACACATTGACATGGCTAGAGTCAGCTGGTATAGAAGAGGTTTTTGTCTTCTGTTGTGCTCATTCGAAGCAGGTGATTAACTATTTGGAGAAATCTGAGTGGTTTAATCAACCTAATTTCACTGTAACAACTATTGAGTCTCAGAATTCTGTCAGTGCTGGAGATGCTCTGCGTGTTATATACGAGCGCAATGTGATACAAGGAGACTTTGTCCTTGTCAGCGGAGATACTGTGAGCAACATGTCGCTTACTCAGGCAATTTTAGAACATAAAGAAAGGAAGAAGAAAGATAGTAATGCTGTAATGACCATGGTTATCAAACGGTCAAAAAATAACCCAGCTATCCACCAGTCTCGACTTGGTACTGATGAAATTTTCATGGCTATTGATCCTGATACCAAGCAACTTTTGTATTATGAGGATAAGGCAGACTATTCAAAAGGCACTCTACATCTCGAAAATTCATTGCTTGCTGATAATCCTTCCCTCTCTCTGCACCACGACAAGCAGGATTGTTACATTGACATCTGCTCGCCAGAAGTCCTTAGCCTATTTACAGACAATTTTGACTACCAACATCTTCGGCGTCATTTTGTCAAGGGATTGCTTGTTGATGATATAATGGGATACAAAATTTTTGTTCATGAAATCCGCTCAGACTATGCTGCAAGGATCGATAATTTCCGAAGCTATGACACAGTCAGCAAGGATATAATTCATAGATGGACATATCCACTGGTACCAGATGTTATGAATTTTGGCAACACTTCTACTAAGCTTGAAAGACAAGGAATATATCGTGCCTCAGAAATTTCGCAATCACAATCAGCTGTTGTTGGTCCATTCTCTGTTATAGGATTTGGCACCAAAATTGGCAACAACACTAAGATTTTAAATTCCGTTGTTGGAGAAGGATGTACAATTGGGTCAAATGTACACATAGAGGGATGCTATATTTGGGACAATGTCACCATAGAAGATGGGTGTAAACTTAGTTATGGCATTGTATGTGATGGGGTGATTATGAAATCAGGATCTGCTCTGGAACCTGGTGTTGTATTGTCTTTTAAGGTTGCAGTTGGGCAGGAGTTTGTTGTTCCTCCTTATTCACAAGTATCTTTACTACAGCAACCGATTGAGGAAGATAGCGATGAAGAGCTTGAATATGCTGATAGTACTAGTGCTATCACCAGCACACTGGATAAGTCAGATGGAGAGAGTGATTCCGAATCATTGGATACACATTTTAACCCTGCTTCAGAGCTAGGTTTTGGTGGGGTTGGTTATGTTTGGCCAAAATGTGAAGCAGGTCACGAGGAAGAGTGGAGGCATTCAGTGGCGCCTATTACTGAAGATAAAATTTTGGAGGCAGTGAAAGCTATGGAAAATGAACTGGGGTTAATTCTTGATGGAAATACTCTTCCACCTTCTGGGGAGCTGATACCTAATTCCATTGATTCTGATGAAGACGACAATGACGATTCAAGAGATGAATTTGACAAAGAGGTTGAAGCAACTTTTCTCAGGGCTGTGCATGAAAGCATAGAAGATAATCATTTGACTTTAGAAGTCAACTCTTTGAAGTTATCATACAATAAGATAGCTGCTGATTGTGCTGGAGCTTTATTTTATGCAATGATGAAGTATGCTGTAGACATGCCCCATAGTTCAGCAGAGATCTTGACTAAGAATGTTCAGGCTGTACTTACAAAATGGAAAAAGGTTCTTAAATCCTATCTGAATGATATGGACGAACAGATTGAAGTGATTCTAAAATTTGAAGAAATGTGTTTGGAATCTGCTAAGGAGTATGCTCCATTGTTCACCAAGATTTTGCATTACATGTATAATGAAGATATTATAGAAGAAGATGCTATTTTGAGTTGGGAAGATGAGAAGAAAGAAGCAGACGAGTCGGATAAAGTATTTGTTAAGCAAGCCCAAGCTTTTATTCAATGGCTAAAAGAAGCTCCTGAAGAAGACGATGACGAGGATGACGACGAGGAAGAGTCGAAATAA 2190 0.3977 MGAPKKSSARVSEDHDELVRVPLQAILLADSFTTKFRPITLERPKVLLPLVNAPMINYTLTWLESAGIEEVFVFCCAHSKQVINYLEKSEWFNQPNFTVTTIESQNSVSAGDALRVIYERNVIQGDFVLVSGDTVSNMSLTQAILEHKERKKKDSNAVMTMVIKRSKNNPAIHQSRLGTDEIFMAIDPDTKQLLYYEDKADYSKGTLHLENSLLADNPSLSLHHDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFVHEIRSDYAARIDNFRSYDTVSKDIIHRWTYPLVPDVMNFGNTSTKLERQGIYRASEISQSQSAVVGPFSVIGFGTKIGNNTKILNSVVGEGCTIGSNVHIEGCYIWDNVTIEDGCKLSYGIVCDGVIMKSGSALEPGVVLSFKVAVGQEFVVPPYSQVSLLQQPIEEDSDEELEYADSTSAITSTLDKSDGESDSESLDTHFNPASELGFGGVGYVWPKCEAGHEEEWRHSVAPITEDKILEAVKAMENELGLILDGNTLPPSGELIPNSIDSDEDDNDDSRDEFDKEVEATFLRAVHESIEDNHLTLEVNSLKLSYNKIAADCAGALFYAMMKYAVDMPHSSAEILTKNVQAVLTKWKKVLKSYLNDMDEQIEVILKFEEMCLESAKEYAPLFTKILHYMYNEDIIEEDAILSWEDEKKEADESDKVFVKQAQAFIQWLKEAPEEDDDEDDDEEESK 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03729 729 SUPERFAMILY ARM repeat 555 714 IPR016024 -
Trre3g03729 729 ProSiteProfiles W2 domain profile. 546 721 IPR003307 GO:0005515
Trre3g03729 729 CDD eIF-2B_epsilon_N 23 239 IPR035543 -
Trre3g03729 729 Gene3D - 544 722 - -
Trre3g03729 729 Pfam eIF4-gamma/eIF5/eIF2-epsilon 642 721 IPR003307 GO:0005515
Trre3g03729 729 SMART 542_3 630 717 IPR003307 GO:0005515
Trre3g03729 729 Gene3D Hexapeptide repeat proteins 319 458 - -
Trre3g03729 729 FunFam Translation initiation factor eIF-2B subunit epsilon 12 303 - -
Trre3g03729 729 SUPERFAMILY Trimeric LpxA-like enzymes 267 426 IPR011004 -
Trre3g03729 729 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 9 724 - -
Trre3g03729 729 FunFam Trimeric LpxA-like enzyme 316 449 - -
Trre3g03729 729 SUPERFAMILY Nucleotide-diphospho-sugar transferases 20 369 IPR029044 -
Trre3g03729 729 CDD W2_eIF2B_epsilon 556 714 IPR044123 GO:0005085|GO:0031369
Trre3g03729 729 Pfam Nucleotidyl transferase 25 164 IPR005835 GO:0009058
Trre3g03729 729 MobiDBLite consensus disorder prediction 535 555 - -
Trre3g03729 729 CDD LbH_eIF2B_epsilon 341 419 - -
Trre3g03729 729 MobiDBLite consensus disorder prediction 541 555 - -
Trre3g03729 729 FunFam Translation initiation factor eIF-2B epsilon subunit 545 722 - -
Trre3g03729 729 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 9 303 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03729 Trre-Chr3 48151155 48160903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03729 1 714 Eukaryotic Initiation Factors Gene Family AT2G34970 63.209 0.0 920
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03729 K03240 - gmx:100784894 1196.8