Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03723 ATGCCTGAGGCATCGGATCGCACATCTTGCACAAAGTTTATTTCCAAAAATGCAGCCAATACCAAAGACTCAACACATTGTATCCATGAACTTGTCGATAGTGGTTTTTTCTTCAAGGAGTGTCCACATCCTGATGAGAAGCAAAGAGCTGACCTTAGCCGGAAACTTGGCTTGGACAACAAGCAAGTTAAGTTCTGGTTTCAGAATAAACGGACGCAAATGAAGACACAACTGGAACGCCATGAGAACATGCTTCTTAGGCAGGAAAACGAGAAGCTACGAGCTGAAAACAGTATGTTGAAGGAGGCTCCAGCAAATCCAATTTGCAACAACTGTGGTGTCCCGAGAATTCCTGGAGAAATTTCAATGGATGATCACCAGCTTAGAATTGAGAATGCTCGACTGAAGGAGGAGTTGACCCGACTGACTGCCTTAACCACATTCCTCGGCCGGCCAATCTCTGCATTGACTGCAATGTCTATGCAGAATCTGAATTTAGGTCTTGGATTCGGTATGAGAAGGAATGGAATTGCTGGTCCGAGCAATTACAACATGCAGCTACCAATGAGATTTGTTATGGGAGATGGAGTTATGGGATCTGCACAGGAAAATTCTAGAATGCAACCACCAATGGGAATGGTTGGAAATGATCCCCAGCAAGAGAGATCTATGCTTATCGATCTCGCCTTAGATGCGATGAATGAACTCATCAAACTGAGCGAACCTGAATCCCCCCTCTGGATTAAGAGTCCAGATACCGGGAAGGATGTGCTTAACATTGAAGAGTATGGGAGGAATGGTTCTCCATTTAACACTCCAATCCCAAGTGGTTACACAACTGAAGCTACAAGAGAAATCGGGCTATTATACACCAACACTAATGCTCTCGTGGAAACATTCCTAGACGCGGACCGGTGGTCGGAGATGTTTCCATGTATGATTGCTCAAGCTGCAACCTTGGATGTATTATCCAATGGGATGGGTGGAACAAGAAATGGAGCTATGCAAGTGATGCAAGCTGAGGTTCAATTACCTTCTCCATTTGTCCCGGTTCGACAATATTGTTTCCTTAGGTTCTGCAAGCAGCTTGCTGAAGGTATTTGGGTCCTGGTCGACGTTTCGGTCGACCTTGGTCGTAATGATCCAAACGGCATTCCTTACATGAGCTGTAGGAAGCTTCCATCTGGTTGTATATTGCAGGACGTGGATGGCTTGTGCAAGATCACTTGGGTGGATCATTCTCAATATGATGAGAGTGTTGTCCACCAAACCTATCGCACAATGGTTAGCTCCGGCCTTGCATTTGGTGCCCAAAGATGGGTTGCTACTCTCCAGAGGCACTGTGAATCCCTAGCTATCCTCATGGCTGCTGCACCATCTGATGACCCTACAGTCATAAGCCTGTCTGGAAAGAGAAGTATGTCAAAGCTTGCTCAGCGGATGAGAGACTACTTCTGGTCCGGAGTTTCTCCGTCTTCGGCTTGTAAGTGGGAAATTATTCCCATTAATTACATGGGAAGCATTGACATGAGAATCATGTCCCGGAAAATTCCAGATGCTTCTGGAGAAAATCTTAGCATTGTGCTAAGTGCTGCGACATCTGTTTGGATGCCGGTGTCGCGGCAAAGGGTGTTTGACTTCCTCCGCGATGCACGCTTGAGAGGTGAATGGGATCTTTTGTCCAGTGGTGGAACAATGCAAGAAATGGTCCACATTGCTACAGGAGGACTTGGAAATTATGTTTCTATCATTTCCACCGATAATGCTGCGAATGGAAACGAGGGGTTGTATCTGCAAGATTCATGGACCGATAGCTCTGGTTCGATGGTTGTCTACTCTCCCATCAACATGCAGTCCTTGAACTTGGTGATGTCTGGAAGAGATTCTTCATTTGTTGCTCTTTTGCCTTCCGGCTTTTCAATTCTTCCGGATGGCTATTCGAGTAACAACAACATCATTGGAACTTCAAGTGACAGAAGCAGCAGCAGTGGCAACGACAATGACAACGGCGGTTGCTTGCTCACTATTGGATTGCAAATGTTGCTGAACAACCATCCATCAAGCAAGCTAACAGCTGAATCGGTTGATACTATCAATAACCACCTTGCGACCACCATCCAGAAGGTCAAAGACGCTCTCGGAGTCGCTTGA 2151 0.4603 MPEASDRTSCTKFISKNAANTKDSTHCIHELVDSGFFFKECPHPDEKQRADLSRKLGLDNKQVKFWFQNKRTQMKTQLERHENMLLRQENEKLRAENSMLKEAPANPICNNCGVPRIPGEISMDDHQLRIENARLKEELTRLTALTTFLGRPISALTAMSMQNLNLGLGFGMRRNGIAGPSNYNMQLPMRFVMGDGVMGSAQENSRMQPPMGMVGNDPQQERSMLIDLALDAMNELIKLSEPESPLWIKSPDTGKDVLNIEEYGRNGSPFNTPIPSGYTTEATREIGLLYTNTNALVETFLDADRWSEMFPCMIAQAATLDVLSNGMGGTRNGAMQVMQAEVQLPSPFVPVRQYCFLRFCKQLAEGIWVLVDVSVDLGRNDPNGIPYMSCRKLPSGCILQDVDGLCKITWVDHSQYDESVVHQTYRTMVSSGLAFGAQRWVATLQRHCESLAILMAAAPSDDPTVISLSGKRSMSKLAQRMRDYFWSGVSPSSACKWEIIPINYMGSIDMRIMSRKIPDASGENLSIVLSAATSVWMPVSRQRVFDFLRDARLRGEWDLLSSGGTMQEMVHIATGGLGNYVSIISTDNAANGNEGLYLQDSWTDSSGSMVVYSPINMQSLNLVMSGRDSSFVALLPSGFSILPDGYSSNNNIIGTSSDRSSSSGNDNDNGGCLLTIGLQMLLNNHPSSKLTAESVDTINNHLATTIQKVKDALGVA 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03723 716 Pfam Homeodomain 37 75 IPR001356 GO:0003677
Trre3g03723 716 ProSiteProfiles 'Homeobox' domain profile. 38 77 IPR001356 GO:0003677
Trre3g03723 716 CDD homeodomain 37 77 IPR001356 GO:0003677
Trre3g03723 716 SUPERFAMILY Homeodomain-like 37 80 IPR009057 -
Trre3g03723 716 Coils Coil 71 103 - -
Trre3g03723 716 FunFam Homeobox-leucine zipper protein HDG1 6 93 - -
Trre3g03723 716 SMART HOX_1 15 81 IPR001356 GO:0003677
Trre3g03723 716 Pfam START domain 228 450 IPR002913 GO:0008289
Trre3g03723 716 SUPERFAMILY Bet v1-like 470 709 - -
Trre3g03723 716 SUPERFAMILY Bet v1-like 221 451 - -
Trre3g03723 716 CDD START_ArGLABRA2_like 222 449 - -
Trre3g03723 716 SMART START_1 227 450 IPR002913 GO:0008289
Trre3g03723 716 Gene3D - 15 93 - -
Trre3g03723 716 ProSiteProfiles START domain profile. 218 453 IPR002913 GO:0008289
Trre3g03723 716 Gene3D - 231 450 IPR023393 -
Trre3g03723 716 ProSitePatterns 'Homeobox' domain signature. 52 75 IPR017970 GO:0000981|GO:0006355
Trre3g03723 716 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 26 713 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03723 Trre-Chr3 48063381 48066761 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03723 26 713 Homeobox Transcription Factor Family AT3G61150 47.465 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre3g03723 START 9.2e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03723 K09338 - gmx:100820113 825.469