Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03722 ATGCCTGAGGCATCGGATCGCACATCTTGCACAAATTTCTTCAAGGAGTGTCCACATCCTGATGAGAAGCAAAGAGCTGACCTTAGCCGGAAACTTGGCTTGGACAACAAGCAAGTTAAGTTCTGGTTTCAGAATAAACGGACGCAAATGAAGACACAACTGGAACGCCATGAGAACATGCTTCTTAGGCAGGAAAACGAGAAGCTACGAGCTGAAAACAGTATGTTGAAGGAGGCTCCAGCAAATCCAATTTGCAACAACTGTGGTGTCCCGAGAATTCCTGGAGAAATTTCAATGGATGATCACCAGCTTAGAATTGAGAATGCTCGACTGAAGGAGGAGTTGACCCGACTGACTGCCTTAACCACATTCCTCGGCCGGCCAATCTCTGCATTGACTGCAATGTCTATGCAGAATCTGAATTTAGGTCTTGGATTCGGTATGAGAAGGAATGGAATTGCTGGTCCGAGCAATTACAACATGCAGCTACCAATGAGATTTGTTATGGGAGATGGAGTTATGGGATCTGCACAGGAAAATTCTAGAATGCAACCACCAATGGGAATGGTTGGAAATGATCCCCAGCAAGAGAGATCTATGCTTATCGATCTCGCCTTAGATGCGATGAATGAACTCATCAAACTGAGCGAACCTGAATCCCCCCTCTGGATTAAGAGTCCAGATACCGGGAAGGATGTGCTTAACATTGAAGAGTATGGGAGGAATGGTTCTCCATTTAACACTCCAATCCCAAGTGGTTACACAACTGAAGCTACAAGAGAAATCGGGCTATTATACACCAACACTAATGCTCTCGTGGAAACATTCCTAGACGCGGACCGGTGGTCGGAGATGTTTCCATGTATGATTGCTCAAGCTGCAACCTTGGATGTATTATCCAATGGGATGGGTGGAACAAGAAATGGAGCTATGCAAGTGATGCAAGCTGAGGTTCAATTACCTTCTCCATTTGTCCCGGTTCGACAATATTGTTTCCTTAGGTTCTGCAAGCAGCTTGCTGAAGGTATTTGGGTCCTGGTCGACGTTTCGGTCGACCTTGGTCGTAATGATCCAAACGGCATTCCTTACATGAGCTGTAGGAAGCTTCCATCTGGTTGTATATTGCAGGACGTGGATGGCTTGTGCAAGATCACTTGGGTGGATCATTCTCAATATGATGAGAGTGTTGTCCACCAAACCTATCGCACAATGGTTAGCTCCGGCCTTGCATTTGGTGCCCAAAGATGGGTTGCTACTCTCCAGAGGCACTGTGAATCCCTAGCTATCCTCATGGCTGCTGCACCATCTGATGACCCTACAGTCATAAGCCTGTCTGGAAAGAGAAGTATGTCAAAGCTTGCTCAGCGGATGAGAGACTACTTCTGGTCCGGAGTTTCTCCGTCTTCGGCTTGTAAGTGGGAAATTATTCCCATTAATTACATGGGAAGCATTGACATGAGAATCATGTCCCGGAAAATTCCAGATGCTTCTGGAGAAAATCTTAGCATTGTGCTAAGTGCTGCGACATCTGTTTGGATGCCGGTGTCGCGGCAAAGGGTGTTTGACTTCCTCCGCGATGCACGCTTGAGAGGTGAATGGGATCTTTTGTCCAGTGGTGGAACAATGCAAGAAATGGTCCACATTGCTACAGGAGGACTTGGAAATTATGTTTCTATCATTTCCACCGATAATGCTGCGAATGGAAACGAGGGGTTGTATCTGCAAGATTCATGGACCGATAGCTCTGGTTCGATGGTTGTCTACTCTCCCATCAACATGCAGTCCTTGAACTTGGTGATGTCTGGAAGAGATTCTTCATTTGTTGCTCTTTTGCCTTCCGGCTTTTCAATTCTTCCGGATGGCTATTCGAGTAACAACAACATCATTGGAACTTCAAGTGACAGAAGCAGCAGCAGTGGCAACGACAATGACAACGGCGGTTGCTTGCTCACTATTGGATTGCAAATGTTGCTGAACAACCATCCATCAAGCAAGCTAACAGCTGAATCGGTTGATACTATCAATAACCACCTTGCGACCACCATCCAGAAGGTCAAAGACGCTCTCGGAGTCGCTTGA 2079 0.4637 MPEASDRTSCTNFFKECPHPDEKQRADLSRKLGLDNKQVKFWFQNKRTQMKTQLERHENMLLRQENEKLRAENSMLKEAPANPICNNCGVPRIPGEISMDDHQLRIENARLKEELTRLTALTTFLGRPISALTAMSMQNLNLGLGFGMRRNGIAGPSNYNMQLPMRFVMGDGVMGSAQENSRMQPPMGMVGNDPQQERSMLIDLALDAMNELIKLSEPESPLWIKSPDTGKDVLNIEEYGRNGSPFNTPIPSGYTTEATREIGLLYTNTNALVETFLDADRWSEMFPCMIAQAATLDVLSNGMGGTRNGAMQVMQAEVQLPSPFVPVRQYCFLRFCKQLAEGIWVLVDVSVDLGRNDPNGIPYMSCRKLPSGCILQDVDGLCKITWVDHSQYDESVVHQTYRTMVSSGLAFGAQRWVATLQRHCESLAILMAAAPSDDPTVISLSGKRSMSKLAQRMRDYFWSGVSPSSACKWEIIPINYMGSIDMRIMSRKIPDASGENLSIVLSAATSVWMPVSRQRVFDFLRDARLRGEWDLLSSGGTMQEMVHIATGGLGNYVSIISTDNAANGNEGLYLQDSWTDSSGSMVVYSPINMQSLNLVMSGRDSSFVALLPSGFSILPDGYSSNNNIIGTSSDRSSSSGNDNDNGGCLLTIGLQMLLNNHPSSKLTAESVDTINNHLATTIQKVKDALGVA 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03722 692 Gene3D - 207 426 IPR023393 -
Trre3g03722 692 SUPERFAMILY Bet v1-like 446 685 - -
Trre3g03722 692 SMART HOX_1 3 57 IPR001356 GO:0003677
Trre3g03722 692 SUPERFAMILY Homeodomain-like 12 56 IPR009057 -
Trre3g03722 692 ProSiteProfiles 'Homeobox' domain profile. 14 53 IPR001356 GO:0003677
Trre3g03722 692 Pfam START domain 204 426 IPR002913 GO:0008289
Trre3g03722 692 FunFam Homeobox-leucine zipper protein HDG1 8 69 - -
Trre3g03722 692 Coils Coil 47 79 - -
Trre3g03722 692 CDD homeodomain 12 53 IPR001356 GO:0003677
Trre3g03722 692 CDD START_ArGLABRA2_like 198 425 - -
Trre3g03722 692 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 10 689 IPR042160 -
Trre3g03722 692 SMART START_1 203 426 IPR002913 GO:0008289
Trre3g03722 692 ProSiteProfiles START domain profile. 194 429 IPR002913 GO:0008289
Trre3g03722 692 Pfam Homeodomain 12 51 IPR001356 GO:0003677
Trre3g03722 692 SUPERFAMILY Bet v1-like 197 427 - -
Trre3g03722 692 ProSitePatterns 'Homeobox' domain signature. 28 51 IPR017970 GO:0000981|GO:0006355
Trre3g03722 692 Gene3D - 4 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03722 Trre-Chr3 48063381 48066761 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03722 12 689 Homeobox Transcription Factor Family AT3G61150 47.857 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre3g03722 START 8.6e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03722 K09338 - gmx:100820113 824.698