Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03716 ATGGAAGATGAATCAATGAAAAAGTGTTGGAGAAAAGAAGTAGCAGAAAATCTTCAAAGACTACACTCTCTCTTGTTCGGCGTTGAACGTGCCCTAGATCAACAAAATCGCGATTTCTCTTCCGCTTACATTCTCTCTCTTCGTCTCATCGGTTTCATTGATTCTCGTTCTCAATCAGAAATCGATCAAGTTTATCTTCAACAAACTCGTCGTCAAGCTTTAACCTATCTTCATACAGCTAAACAATCTCTCACTCCTATCATTGATCGCCAAGCTTTTGAGCAAGTAAAGAGGTCTCCAGGACCCATTTTTAGGTCAACAGGAGATATTGACATTGGCAAGATACAGAATTCTAAATACTTTCAAGCTCTTCTCAAGCCATCTAAAGAAAAAGATTCCAATCAATTGGTTGATCAACGGGGGAAACAAAACAAGACAGACAGAGAAGCATCAAAGGAAGTGGTGCAAGCAAAGTTAACATCCATATATGGGAAAAGCAGCTTGAGGACTAGTAATGGTTCCAAAAGTTTTTTCAACTTGAAAAATAACAACTCTGAGGACTGCATAGTTATTGGAAGGCCTCAATCACATGGCAACCATACAAAGGGTCCTGGTGTCTCTTCTGTTTTCGAAGTTGAAGGAGAAGGAAGAGCTTATGGAAACACTTTGCCGACAAAACGTGCACACGTGGAAATTACTAGCCCCAGAGTTGGTTATGTCAAGTCACCTTCGATCAAGGAGGAAGTTAATCCTGATGTCACTGGCAATGGGTTTGTTACTGCCAGAGCAAAGCTGGAAATGGATGTAAAGAAAAAGCAGGGTGCAATTGGTTCACCCAGTGCACCTGTCTCACCACAATGCGACAACAGTCCTACCAACAGGCTATATGGTGGGAGATCATATGGTGTTTCACGACGTGGCGTCCGCGGTAATTTTGTCCCCCCTATTAAATCCAATGGGAGCAATACTGGAAATATGACTTCCCGAATTGCTGGCAACAAGTGTGGTGATTCTTTAGACGAGTCTACAAAGAAATGTTTAGAAATGCTGTATGGCCCTGATGGTGAACTTCCTGAGAAATTAAGGAATTTAGAACCTCGCCTCATTGAACATGTTAGTAACGAGATTATGGATAAAAATCCCAATGTCCACTGGGATGACATAGCTGGATTGGCCCATGCCAAAGTTTGTGTCAATGAGATGGTCATATTACCTCTGCAACGCCCTGACTTATTTATGGGCTGCCGTTCTCCTGGGAGAGGTCTGCTTCTATTTGGTCCACCAGGGACTGGTAAAACAATGATAGGAAAAGCCATAGCTGGGGAGGCAAAAGCAACCTTCTTTTACATATCTGCAAGCTCGTTGACTAGCAAGTGGATTGGTGAAGGTGAAAAGCTAGTAAGAGCCCTTTTTGGAGTGGCCAGTTGTCGTCAGCCAGCAGTAATTTTTGTTGATGAAATAGATTCGCTTTTGTCTCGGCGTAAGTCAGATGGTGAGCATGAAGCAAGCAGAAGGCTAAAGACACAATTTCTTATTGAAATGGAAGGTTTCGACGGTGGTACCGAGCAAATTCTGCTTATAGGGGCAACAAATCGTCCTCAAGAGCTTGATGAAGCAGCACGGAGGAGACTTACTAAAAGACTTTATATTCCCCTACCATCCTCAGAAGCAAGAGCTTGGATTGCACGTAGCCTTTTAGAGAAGGATGGATTATTCAATCTATCAAACGAGGAAATGGATATCATATGCAACTTAACGGATGGTTATTCAGGATCAGACATGAAAAACTTAGTGAAGGATGCTTCTATGGGTCCTCTGAGAGAGAAAATAAGACAAGGTGTAAATATTGCAGATTTGAAAAAGGAGGATATGAGGACAGTAACTCTTCAGGACTTCAAAAATTCCCTGCATGAGGTGAGACCTTCTGTTTCACCTGATGAACTTGGAACTTATGAGGAATGGAACAATAAATTTGGAAGCATGGCAGTTTAG 1992 0.4212 MEDESMKKCWRKEVAENLQRLHSLLFGVERALDQQNRDFSSAYILSLRLIGFIDSRSQSEIDQVYLQQTRRQALTYLHTAKQSLTPIIDRQAFEQVKRSPGPIFRSTGDIDIGKIQNSKYFQALLKPSKEKDSNQLVDQRGKQNKTDREASKEVVQAKLTSIYGKSSLRTSNGSKSFFNLKNNNSEDCIVIGRPQSHGNHTKGPGVSSVFEVEGEGRAYGNTLPTKRAHVEITSPRVGYVKSPSIKEEVNPDVTGNGFVTARAKLEMDVKKKQGAIGSPSAPVSPQCDNSPTNRLYGGRSYGVSRRGVRGNFVPPIKSNGSNTGNMTSRIAGNKCGDSLDESTKKCLEMLYGPDGELPEKLRNLEPRLIEHVSNEIMDKNPNVHWDDIAGLAHAKVCVNEMVILPLQRPDLFMGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSRRKSDGEHEASRRLKTQFLIEMEGFDGGTEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIARSLLEKDGLFNLSNEEMDIICNLTDGYSGSDMKNLVKDASMGPLREKIRQGVNIADLKKEDMRTVTLQDFKNSLHEVRPSVSPDELGTYEEWNNKFGSMAV 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03716 663 Gene3D - 381 655 IPR027417 -
Trre3g03716 663 Pfam AAA+ lid domain 585 620 IPR041569 -
Trre3g03716 663 FunFam Fidgetin-like 1 381 563 - -
Trre3g03716 663 Pfam Vps4 C terminal oligomerisation domain 625 659 IPR015415 -
Trre3g03716 663 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 381 658 IPR027417 -
Trre3g03716 663 Gene3D - 553 639 - -
Trre3g03716 663 PANTHER AAA DOMAIN-CONTAINING 175 660 - -
Trre3g03716 663 FunFam Fidgetin like 1 553 639 - -
Trre3g03716 663 ProSitePatterns AAA-protein family signature. 524 543 IPR003960 GO:0005524|GO:0016887
Trre3g03716 663 Pfam ATPase family associated with various cellular activities (AAA) 422 552 IPR003959 GO:0005524|GO:0016887
Trre3g03716 663 MobiDBLite consensus disorder prediction 273 295 - -
Trre3g03716 663 MobiDBLite consensus disorder prediction 279 295 - -
Trre3g03716 663 SMART AAA_5 418 554 IPR003593 GO:0016887
Trre3g03716 663 MobiDBLite consensus disorder prediction 315 332 - -
Trre3g03716 663 MobiDBLite consensus disorder prediction 307 336 - -
Trre3g03716 663 MobiDBLite consensus disorder prediction 131 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03716 Trre-Chr3 48022457 48029991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03716 336 658 Calmodulin-binding Proteins AT3G56690 30.330 9.87e-40 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03716 K22766 - gmx:100789161 1011.13