Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03704 ATGGTTAAGAGACTTGGCGGACAAGGATTACCATTAAAGCAATCTGAGGCAACGACTGTTGCTAAAACTGATATTAAGACTGACAAGCTACAAGAAGTGCATAGCTTGCAGAATGAGAAGCTAGAAGAAGCCAACTGGGCCAAACTCAATGGAGAAGTGCAGCATAGCTCACAGAATGAGAAGCTACAAGAAGCAAACTGGGCCAAACTCAATGGAGAAGTGCATAGCACACAGGATAATCTTGATTTTATTCTGAGGGAAGCCGAGACAAACAGGTTGAATATCAGTGTCAGTCCAAGTGGCGACGCTGATTTCAAGACTATTGCTGAGGCGATCAACAGCATTGCCACACCAAATACTAGAAGAGTGGTCATTTCCATTGCTCCCGGTCTTTACAGGGAGAAACTTTTGATCCCCAGCACATTACCTTTCATCACATTCTTGGGGGACACGATCAATAAACCAAAAATTACCGGAAATGCTAAAGCGTCTGACATCGGGAGTGATGGAAAACCGCTTAAGACATACCATACTGCAACTGTTGCAGTGGATGCTGCCTACTTCATTGCCATGAATATAATATTTGAGAATACAGCATCACCTCGTAAAGGATCAAGTAACGATCAAGCAGTAGCTCTTCGTCTCTCGGGAACCAAATGCGCGGTTTACAATAGCGAAGTATATGGATTTCAAGACACTCTATATGATCACCAAGGGCTCCATTACTTCAAAAACTGCAAAATTCAAGGCACGGTTGATTTCATTTTCGGAAATGGAAAGTCCCTATACGAGGGCTGCACTCTAATTTCCATAGCCCAAAATTCGGGCTTTGTCACAGCTCAAAAGCGCGATGTTTTGAATGATGACACTGGGTTTTCAATATTAAACAGCAAAGTAGTAGGAAGTGGAAGTGTTTATTTGGGAAGAGCGTGGGGCAATTACTCGAGGGTAATTTTTTCTTATACCTACATGGATAGTCTGGTTCTCCCTGAAGGATGGGTCGACAGTATGGACAACAAAGACCATCATAACTTGACCGTATTCTATGCAGAATATAAGTGCAGCGGACCGGGATCAAGCTTTTCTAGAAGACCTAGCTGGATACGGAGATTGTCCGACAAAGATGCCCAAGAATTTATCGGAGTCCAATTCATTTACGGGGATACATGGCTTAGCCCACCACTGTGA 1188 0.4335 MVKRLGGQGLPLKQSEATTVAKTDIKTDKLQEVHSLQNEKLEEANWAKLNGEVQHSSQNEKLQEANWAKLNGEVHSTQDNLDFILREAETNRLNISVSPSGDADFKTIAEAINSIATPNTRRVVISIAPGLYREKLLIPSTLPFITFLGDTINKPKITGNAKASDIGSDGKPLKTYHTATVAVDAAYFIAMNIIFENTASPRKGSSNDQAVALRLSGTKCAVYNSEVYGFQDTLYDHQGLHYFKNCKIQGTVDFIFGNGKSLYEGCTLISIAQNSGFVTAQKRDVLNDDTGFSILNSKVVGSGSVYLGRAWGNYSRVIFSYTYMDSLVLPEGWVDSMDNKDHHNLTVFYAEYKCSGPGSSFSRRPSWIRRLSDKDAQEFIGVQFIYGDTWLSPPL 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03704 395 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 87 392 - -
Trre3g03704 395 ProSitePatterns Pectinesterase signature 2. 248 257 IPR033131 -
Trre3g03704 395 SUPERFAMILY Pectin lyase-like 93 393 IPR011050 -
Trre3g03704 395 Pfam Pectinesterase 94 388 IPR000070 GO:0030599|GO:0042545
Trre3g03704 395 Gene3D - 90 393 IPR012334 -
Trre3g03704 395 FunFam Pectinesterase 90 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03704 Trre-Chr3 47910207 47918328 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03704 95 393 Carbohydrate Esterase AT5G47500 45.000 1.93e-89 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03704 K01051 - tpra:123885915 484.952