Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03703 ATGGCTTCATGCAGCAGCTATGCACTTCTTCTCATTTTCCTATGTTTCCATGCAATGGCAGCTCAAGTTAAGAGACTTGGCGGACAAGGATTACCATTAAAGCAATCTGAGGCAACGACTGTTGCTAAAACTGATATTAAGACTGACAAGCTACAAGAAGTGCATAGCTTGCAGAATGAGAAGCTAGAAGAAGCCAACTGGGCCAAACTCAATGGAGAAGTGCAGCATAGCTCACAGAATGAGAAGCTACAAGAAGCAAACTGGGCCAAACTCAATGGAGAAGTGCATAGCACACAGGATAATCTTGATTTTATTCTGAGGGAAGCCGAGACAAACAGGTTGAATATCAGTGTCAGTCCAAGTGGCGACGCTGATTTCAAGACTATTGCTGAGGCGATCAACAGCATTGCCACACCAAATACTAGAAGAGTGGTCATTTCCATTGCTCCCGGTCTTTACAGGGAGAAACTTTTGATCCCCAGCACATTACCTTTCATCACATTCTTGGGGGACACGATCAATAAACCAAAAATTACCGGAAATGCTAAAGCGTCTGACATCGGGAGTGATGGAAAACCGCTTAAGACATACCATACTGCAACTGTTGCAGTGGATGCTGCCTACTTCATTGCCATGAATATAATATTTGAGAATACAGCATCACCTCGTAAAGGATCAAGTAACGATCAAGCAGTAGCTCTTCGTCTCTCGGGAACCAAATGCGCGGTTTACAATAGCGAAGTATATGGATTTCAAGACACTCTATATGATCACCAAGGGCTCCATTACTTCAAAAACTGCAAAATTCAAGGCACGGTTGATTTCATTTTCGGAAATGGAAAGTCCCTATACGAGGGCTGCACTCTAATTTCCATAGCCCAAAATTCGGGCTTTGTCACAGCTCAAAAGCGCGATGTTTTGAATGATGACACTGGGTTTTCAATATTAAACAGCAAAGTAGTAGGAAGTGGAAGTGTTTATTTGGGAAGAGCGTGGGGCAATTACTCGAGGGTAATTTTTTCTTATACCTACATGGATAGTCTGGTTCTCCCTGAAGGATGGGTCGACAGTATGGACAACAAAGACCATCATAACTTGACCGTATTCTATGCAGAATATAAGTGCAGCGGACCGGGATCAAGCTTTTCTAGAAGACCTAGCTGGATACGGAGATTGTCCGACAAAGATGCCCAAGAATTTATCGGAGTCCAATTCATTTACGGGGATACATGGCTTAGCCCACCACTGTGA 1251 0.4341 MASCSSYALLLIFLCFHAMAAQVKRLGGQGLPLKQSEATTVAKTDIKTDKLQEVHSLQNEKLEEANWAKLNGEVQHSSQNEKLQEANWAKLNGEVHSTQDNLDFILREAETNRLNISVSPSGDADFKTIAEAINSIATPNTRRVVISIAPGLYREKLLIPSTLPFITFLGDTINKPKITGNAKASDIGSDGKPLKTYHTATVAVDAAYFIAMNIIFENTASPRKGSSNDQAVALRLSGTKCAVYNSEVYGFQDTLYDHQGLHYFKNCKIQGTVDFIFGNGKSLYEGCTLISIAQNSGFVTAQKRDVLNDDTGFSILNSKVVGSGSVYLGRAWGNYSRVIFSYTYMDSLVLPEGWVDSMDNKDHHNLTVFYAEYKCSGPGSSFSRRPSWIRRLSDKDAQEFIGVQFIYGDTWLSPPL 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03703 416 Gene3D - 111 414 IPR012334 -
Trre3g03703 416 Pfam Pectinesterase 115 409 IPR000070 GO:0030599|GO:0042545
Trre3g03703 416 SUPERFAMILY Pectin lyase-like 114 414 IPR011050 -
Trre3g03703 416 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 107 413 - -
Trre3g03703 416 FunFam Pectinesterase 111 414 - -
Trre3g03703 416 ProSitePatterns Pectinesterase signature 2. 269 278 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03703 Trre-Chr3 47910207 47920761 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03703 116 414 Carbohydrate Esterase AT5G47500 45.000 2.74e-89 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03703 K01051 - tpra:123885915 486.878