Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03700 ATGATCACCAAGGGCTCCATTACTTCAAGGATTGCAAAATTCAAGGCACGGTTGATTTCATCTTCGGAAATGGAAAATCCCTATACGAGGGCTGCACTAATTTCCATAGCCCAAAATTCGGGCTTTGTCACAGCTCAAAAGCGCGAAGCTTTGAAATTTGACACTGGGTTTTCAATATTAAACAGCAAAGTAGTAGGAAGTGGACACATTTATTTGGGACGACCATGGGGAAATTACTCGAGAGTAATTTTTTCCTATACCTACATGGATACTCTGGTTCTCCCTGAAGGATGGGTCGACAGTATGGACGGACACCCCCATAACATGACCGTATTCTATGCAGAATATAAGTGCAGTGGTCCAGGATCAAGCTTTGCTAGAAGACCTAGCTGGAAACGGAGATTGTCGGACAAAGATGCCCAAGAATTTACCGGAGTCCAATTCATTTATGGGGATACTTGGCTTAGCCCACCACTGTGA 480 0.4396 MITKGSITSRIAKFKARLISSSEMENPYTRAALISIAQNSGFVTAQKREALKFDTGFSILNSKVVGSGHIYLGRPWGNYSRVIFSYTYMDTLVLPEGWVDSMDGHPHNMTVFYAEYKCSGPGSSFARRPSWKRRLSDKDAQEFTGVQFIYGDTWLSPPL 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03700 159 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 35 156 - -
Trre3g03700 159 SUPERFAMILY Pectin lyase-like 38 157 IPR011050 -
Trre3g03700 159 Gene3D - 20 158 IPR012334 -
Trre3g03700 159 Pfam Pectinesterase 37 152 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03700 Trre-Chr3 47794734 47795400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03700 16 155 Carbohydrate Esterase AT1G05310 35.714 2.85e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03700 K01051 - tpra:123885915 191.815