Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03672 ATGGGGTCTCAAGGTGGAACAGTTCAAGAGTCAAGGACTACACCTTTATCTAGGTCAGGATCTTTGTATAATCTAACCCTTGATGAAGTACAAAACCATCTTGGGAATTTAGGGAAGCCACTTGGAAGTATGAATCTTGATGAGTTGCTTAAGAGTGTGTGGAGTGTTGAAGCCGGTGAAGTTTCTGATTTCGGTAACGATGTTGCTGGCACTAACATGCAGCATAATCAACTAGGTGAGATGAATCGACAGGGAAGTTTAACATTATCTGGAGATCTTAGAAAAAAAACTGTTGATGAGGTGTGGAGAGATATGCAAGTAAAGAAGAAGAGGAGTGTTGATAGGGATCGGAAAGCGCGTGACAGACAACAAACACTTGGTGAGATGACTTTGGAGGATTTCTTGGTGAAAGCTGGAGTTGTTGGTGAATCTTTTCATAATAGGGAAGGTGATTTGTTAAGGGTTGATTCGAATGAGGATTCTCGGCAAAATGTTTCACAACATGGTCATCATTGGATGCAATTTCAGCTTCCTCCAGTACAGCAGCAGCAGCAACAACATCAACAAGACAAACATATGATGCCGGGATTTATGGCTGTTCATGCCATTCATCAGCCTTTTCAGGTTGCAGAGCAAGTTTTGGATGCGGCAATCTCACCGTCTTCTTTAATGGGTACATTATCAGATACACAAACACTAGGTCGAAAAAGGGTTGCCTCTGGTATAGTCGTAGAGAAAATTGTGGAGAGGAGGCAAAAGAGGATGATTAAAAATAGGGAATCTGCTGCTCGTTCACGAGCAAGAAGACAGGCTTACACACAAGAACTGGAACTTAAAGTTTCACGTTTGGAAGAAGAAAATGAAAGGCTTAGGAAACAGAATGAGATAGAGAAAGAGGTTCCATGTGTGCCACCACCCGAGCCTAAGAATCAACTCCGCAGAACTAATTCAGCATCCTTTTAA 963 0.4206 MGSQGGTVQESRTTPLSRSGSLYNLTLDEVQNHLGNLGKPLGSMNLDELLKSVWSVEAGEVSDFGNDVAGTNMQHNQLGEMNRQGSLTLSGDLRKKTVDEVWRDMQVKKKRSVDRDRKARDRQQTLGEMTLEDFLVKAGVVGESFHNREGDLLRVDSNEDSRQNVSQHGHHWMQFQLPPVQQQQQQHQQDKHMMPGFMAVHAIHQPFQVAEQVLDAAISPSSLMGTLSDTQTLGRKRVASGIVVEKIVERRQKRMIKNRESAARSRARRQAYTQELELKVSRLEEENERLRKQNEIEKEVPCVPPPEPKNQLRRTNSASF 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03672 320 SUPERFAMILY Leucine zipper domain 250 297 IPR046347 GO:0003700|GO:0006355
Trre3g03672 320 MobiDBLite consensus disorder prediction 1 20 - -
Trre3g03672 320 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 248 300 - -
Trre3g03672 320 MobiDBLite consensus disorder prediction 284 320 - -
Trre3g03672 320 Gene3D - 248 301 - -
Trre3g03672 320 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 16 318 IPR043452 GO:0003700|GO:0045893
Trre3g03672 320 MobiDBLite consensus disorder prediction 284 298 - -
Trre3g03672 320 SMART brlzneu 246 314 IPR004827 GO:0003700|GO:0006355
Trre3g03672 320 Coils Coil 269 300 - -
Trre3g03672 320 Pfam bZIP transcription factor 250 295 IPR004827 GO:0003700|GO:0006355
Trre3g03672 320 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 253 268 IPR004827 GO:0003700|GO:0006355
Trre3g03672 320 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 248 293 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03672 Trre-Chr3 47440009 47442598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03672 1 320 bZIP Transcription Factor Family AT3G56850 57.231 7.23e-107 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre3g03672 bZIP_1 8.9e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03672 K14432 - gmx:100170741 355.525