Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03671 ATGCCTCACAACTCTCAAACATGCAACCATGGAAGAGAACACAACATTACCATTTTCGGTGTTAAACTCACCGGAAGAACTAATGACGACGATGACAACAACAACATCCAACTCTCTGAATACCAACAACCTCTGCCTCAAATTTCCACTTCCACTTCCACTGGTACTAGTTATGTCTCCGACAATGTCGTTCATGCCCCGGACCGATCCCGCAAATGCAAACGAGGTCTTCCTTGGACGGAAGAAGAACAAAGGTTGTTCTTGAAAGGGTTGAGAGAGACTCGTAAGGGTGATTGGAAAAAAATTTCTAGCAACTATGTTAAAACTCGGACTGCAACTCAGGTTGCAAGTCATGCACAAAAGCATTTTCTCCACCGTACTAACGAGAACCGCCGCCGCAGTAAACCTAGTGTCTTTGATCTTAGAGAATCTTCGACTATTATGGAAAATGAGCAGATTCAGCAAGAAAATGTGGTGCCCCTACCTCCACCAACCCCCACCGCATATCCATCCACACACAATGGTGGCATTCCCGACATCCCTTTACCGATCAGTCTTGGTTCAGTAGCATTACCAGTGATGCCTATTTCTTGGTTCGACTTGAATAACAATGGATCTTCTTCTTCCACTAAGACTTTTCCACTGTCATTGAAGTTATAA 660 0.4424 MPHNSQTCNHGREHNITIFGVKLTGRTNDDDDNNNIQLSEYQQPLPQISTSTSTGTSYVSDNVVHAPDRSRKCKRGLPWTEEEQRLFLKGLRETRKGDWKKISSNYVKTRTATQVASHAQKHFLHRTNENRRRSKPSVFDLRESSTIMENEQIQQENVVPLPPPTPTAYPSTHNGGIPDIPLPISLGSVALPVMPISWFDLNNNGSSSSTKTFPLSLKL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03671 219 CDD SANT 78 123 IPR001005 -
Trre3g03671 219 NCBIfam myb-like DNA-binding domain, SHAQKYF class 74 125 IPR006447 GO:0003677
Trre3g03671 219 PANTHER TRANSCRIPTION FACTOR KUA1 3 157 - -
Trre3g03671 219 ProSiteProfiles Myb-like domain profile. 78 123 IPR001005 -
Trre3g03671 219 SMART sant 75 125 IPR001005 -
Trre3g03671 219 Gene3D - 79 127 - -
Trre3g03671 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 127 IPR017930 -
Trre3g03671 219 MobiDBLite consensus disorder prediction 117 138 - -
Trre3g03671 219 Pfam Myb-like DNA-binding domain 78 122 IPR001005 -
Trre3g03671 219 ProSiteProfiles SANT domain profile. 74 130 IPR017884 -
Trre3g03671 219 SUPERFAMILY Homeodomain-like 73 127 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03671 Trre-Chr3 47433456 47435393 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre3g03671 Myb_DNA-binding 6.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03671 - - tpra:123909419 204.912