Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03670 ATGTCTCACAACTCTCAAACATGCAACAATGGAAAAGAACACAGCATTACCATTTTCGGTGTTAAACTCACCGGAAGAACTAATGACGACGATGACAACAACAACATCCAACTCTCTGAATACCAACAACCTCTGCCTCAAATTTCCACTTCCACTTCCACTGGTACTAGTTATGTCTCCGACAATGTCGTTCATGCCCCGGACCAATCCCGCAAATGCAAACGAGGTGTTCCTTGGACGGAAGAAGAACAAAGGTTGTTCTTGAAAGGGTTGGAAAAGTTTGGTAAGGGTAATTGGAAAAAAATTTCTAGCAACTTTGTTAAAACTCGGACTGCAACTCAGGTTGCAAGTCATGCTCAAAAGCATTTTCTCCACCGTACTAACCAGAACCGCCGCCGCAGGAAACCTAGTGTCTTTAATCTTAGAGAATCTTCGACTATTGTGGAAAATGAGCAGATTCAGCAAGAAAATGTGGTGCCCCTACCTCCACCAACCCCCACCGCATATCCATCCACACACAATTGTGGCATTCCCGACATCCCTTTACCGATCAGTCTTGTTCCTGTAGCATTGCCGGTGATGCCTATTTCTTGGTTCGACTTGAATAACAATGGATCTTCTTCTTCCACTAAGACTTTACCACTGTCATTGAAGTTATAA 660 0.4364 MSHNSQTCNNGKEHSITIFGVKLTGRTNDDDDNNNIQLSEYQQPLPQISTSTSTGTSYVSDNVVHAPDQSRKCKRGVPWTEEEQRLFLKGLEKFGKGNWKKISSNFVKTRTATQVASHAQKHFLHRTNQNRRRRKPSVFNLRESSTIVENEQIQQENVVPLPPPTPTAYPSTHNCGIPDIPLPISLVPVALPVMPISWFDLNNNGSSSSTKTLPLSLKL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03670 219 SMART sant 75 125 IPR001005 -
Trre3g03670 219 NCBIfam myb-like DNA-binding domain, SHAQKYF class 74 125 IPR006447 GO:0003677
Trre3g03670 219 FunFam transcription factor MYB1R1 77 128 - -
Trre3g03670 219 CDD SANT 78 123 IPR001005 -
Trre3g03670 219 Pfam Myb-like DNA-binding domain 78 122 IPR001005 -
Trre3g03670 219 SUPERFAMILY Homeodomain-like 73 127 IPR009057 -
Trre3g03670 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 127 IPR017930 -
Trre3g03670 219 Gene3D - 79 127 - -
Trre3g03670 219 ProSiteProfiles Myb-like domain profile. 78 123 IPR001005 -
Trre3g03670 219 ProSiteProfiles SANT domain profile. 74 127 IPR017884 -
Trre3g03670 219 PANTHER TRANSCRIPTION FACTOR KUA1 2 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03670 Trre-Chr3 47427560 47429495 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre3g03670 Myb_DNA-binding 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03670 - - tpra:123909419 202.601