Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03656 ATGGATCATTACAAGGTTTTAGGTTTACACAAAACAGCTTCAAAAGAAGAAATCAAAGCCGCATTCAAAAAATTAGCGTTTCAATTTCATCCAGATAAACATTCTCAATCACCAAAATCCGTTAAAGACAACGCTACACTTCGATTCAAGCAGGTTTCTGAAGCATACGAAGTTCTCATGGATGATCGTAAACGCGCCGATTACAATTACCGGTGGAGGTCCGGCGCCGGAAGACAAGGTTCCGGTGCCAGTGCTGGTGGTAACAGTGGTAACTATTATTACTCTCAGTATAGTTATGGACATGGTAGAAGTGGGAGTAGTTATGAGTATAAAACTAGGTCTAATGGTGGTGGTGGAGGTGGTGGTTTTGCGTCGAAGTTTGAAGTTTTTATTCGGATTTTGACAGCGAAATCTTCTCTTCTTAATCTTGGATTTGCAGCAGCTATATTAGGTGCGATGATCGTTGTTGATACAAGTGGAGAATCCTTATGGAAGATGCAAAATTCTGGGAAATCTTTTGAAGAAGCCATGAACACCATTGGGAAAACAAAATCGTATAAAGAAGATAACATGAATGAACGTCCTTGA 588 0.3997 MDHYKVLGLHKTASKEEIKAAFKKLAFQFHPDKHSQSPKSVKDNATLRFKQVSEAYEVLMDDRKRADYNYRWRSGAGRQGSGASAGGNSGNYYYSQYSYGHGRSGSSYEYKTRSNGGGGGGGFASKFEVFIRILTAKSSLLNLGFAAAILGAMIVVDTSGESLWKMQNSGKSFEEAMNTIGKTKSYKEDNMNERP 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03656 195 FunFam DnaJ domain protein 1 89 - -
Trre3g03656 195 CDD DnaJ 2 61 IPR001623 -
Trre3g03656 195 SMART dnaj_3 1 64 IPR001623 -
Trre3g03656 195 ProSitePatterns Nt-dnaJ domain signature. 49 68 IPR018253 -
Trre3g03656 195 Pfam DnaJ domain 2 69 IPR001623 -
Trre3g03656 195 SUPERFAMILY Chaperone J-domain 1 93 IPR036869 -
Trre3g03656 195 PRINTS DnaJ domain signature 22 37 IPR001623 -
Trre3g03656 195 PRINTS DnaJ domain signature 4 22 IPR001623 -
Trre3g03656 195 PRINTS DnaJ domain signature 64 83 IPR001623 -
Trre3g03656 195 PRINTS DnaJ domain signature 44 64 IPR001623 -
Trre3g03656 195 PANTHER CO-CHAPERONE PROTEIN DJLA 4 114 - -
Trre3g03656 195 Gene3D DnaJ domain 1 98 IPR036869 -
Trre3g03656 195 ProSiteProfiles dnaJ domain profile. 2 72 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03656 Trre-Chr3 47278636 47281725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03656 3 69 C2H2 Transcription Factor Family AT1G74250 41.791 2.15e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03656 - - gmx:100782769 257.684