Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03647 ATGGGAAGCAGAAAGGAAGAAGAGAAGATTGAGAAAATTATTAGGGGTCTTATGAAGCTTCCGCCGAATCGAAGATGTATCAACTGTAATAGTTTGGGACCTCAATATGTATGTACAACATTTTGGACCTTTGTTTGCATTACTTGCAGTGGAATACATCGTGAGTTTACTCATCGTGTGAAGTCTGTCTCAATGGCAAAGTTCACTTTCCAAGAAGTTGATGCTCTTCAAAATGGTGGTAATCAGCGTGCAAGGGAAATATATTTGAAAAATTGGGACTTCCAAATACAGCGGTTGCCAGATAGCAGCAATGTTCATAAAGTGAGGGAGTTCATGAAGAATGTATATGTGGATAAAAGATATGCTGGAACAACGTCGTCTGAAAGACCTCCAAGAGATGCACAGAACCCCACAATTCATGAAGACGACATTAGGCGTGCCAGTTCTTACCATTCATATTCACAAAGCCCTCCATATGATAATCAATATGAGGATCGACGCTATGGAAAGCAAGCAGGGGCTCTGACGAGGAAGCCTGGTTCAGATAAAGTCCGTTATGAAGGGAAGATGTCTAGTATTATCTATAGTCCTGGTCGTTTTAGTGATCACACATATGATGATAGATTTGCAAATGAGGGATCTGGTCCAAGAAATTCCGACTTTTCCGTATCGAGTGGTCACGAGCAATTCAAACCCAATGTTCAGTCTCCCACGTTTCATAAGGACATTGAGTTTAACAGTGCATCTTATAAGCGTCCTGGTTCTAGGTCAAGCGAAGATGTGTGGACTCGAGCAAAAAATGCAGCTCTTGAATCTAATGCCGCTGCCAAGAGAGATGCAGATGGAATTCATCATCAACAGAGAACTACATCATCGCAACCAACAGACAGCAACCTTTCGACCTTAAGATCTTACAATTCTGTTGGTTCAGTTGATTTTTTCTCCGAAGCTTTCCAATCTTCAGGGTCCCTTCAAGATAAAGCATTAGGTGTTTCACTGCCATCTGGTCCTGCAAGATCTGCTAGCTTTGACCTTTCCAAGGCACAAGTGGCATCACCTTCATCTGTTGATCTTTTTCAAACAGCTGCACCATCTCAATCTGCATTGGGAGATCTGTTTCAATTATCTGATATGGAAGCAGCTCCATCTTTCAACGGAAATATACCTCTGCAAACATCCCAAGTTGCATCTGTTGACTTCTTTGTAGATCTTCCTCAGCAACCTTCTGCTGCAACCTCAGATGCAAAATCTGTGGAGTTATCTATCCCTAAAAATGAAGGGTGGGCAACATTTGATACACCTCAGTTCACATCAACTACTGCACAAGTGGAAGTTCCAACGGCAGCATTTGATACACCTCAATTCACATCATCTACTGCACAAGTGGAAATTCCGGCAGCAGCATTTGATACACCTCAGTTCGCATCATCTACTGCACAAGTGGAAATTTCTGCAGCAGCATTTGATACACCTCAGTTCACATCATCTACTGCACAAGTGGAAATTCCAGCAGCAGCAGCAGCAGCAGCACCTTCAAGTGCTGAATCTTTGCAGGGTAGATTTGATCCATTTTCAAATCCAAATATGCAATGGCCATCTTTTGAAATTTCTAGTGCGGATGTACCTTCTGTTACATCTAATGTATGGCATGATGGTGTATGGAATAGAGAAAAACAAGTTCCTGTTATGGCAACAGACACTCAACCATGGAACGCATTTGAAGATTCTGGTACCCATCTTCCCGTGGATGGCAATAGTCAAGGTTTACAATTGCATAATTTCCCATCAGAAAGTTTTGGTTTAAACGCTTCTGAGAGACCCAATAAAGATGGAATCCAAGGTGTTGCTCCTATCGGAGGATTTGATAATCATGAATTTCCATCAAATGGTGATATTCAACATAATGGAATCAATCGTAAATCAACAAATCCATTTGATTTTCCCTTTGATTCTGATGTAGACCAGAGCGATATGTTCCTTGATATGAGCTCTTTGCAAGCTGCTCTGCCAGATGCCCTCTTGCCTGCTGCATTTGGTGGTATCGCTGAACCCTGGCTCCCTCAAAATACAGTGACTCCATATATTTCCTCTGCAGGAGAAGGTGGTTTGTCATTCATGGCAGTGCAAACGACAAGCTCTCAATTACAGAACATCCAAGCACAGGAACCAGTTGCTTCAGTTGGGGGAAATCCTTTTGCATAA 2202 0.4214 MGSRKEEEKIEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCITCSGIHREFTHRVKSVSMAKFTFQEVDALQNGGNQRAREIYLKNWDFQIQRLPDSSNVHKVREFMKNVYVDKRYAGTTSSERPPRDAQNPTIHEDDIRRASSYHSYSQSPPYDNQYEDRRYGKQAGALTRKPGSDKVRYEGKMSSIIYSPGRFSDHTYDDRFANEGSGPRNSDFSVSSGHEQFKPNVQSPTFHKDIEFNSASYKRPGSRSSEDVWTRAKNAALESNAAAKRDADGIHHQQRTTSSQPTDSNLSTLRSYNSVGSVDFFSEAFQSSGSLQDKALGVSLPSGPARSASFDLSKAQVASPSSVDLFQTAAPSQSALGDLFQLSDMEAAPSFNGNIPLQTSQVASVDFFVDLPQQPSAATSDAKSVELSIPKNEGWATFDTPQFTSTTAQVEVPTAAFDTPQFTSSTAQVEIPAAAFDTPQFASSTAQVEISAAAFDTPQFTSSTAQVEIPAAAAAAAPSSAESLQGRFDPFSNPNMQWPSFEISSADVPSVTSNVWHDGVWNREKQVPVMATDTQPWNAFEDSGTHLPVDGNSQGLQLHNFPSESFGLNASERPNKDGIQGVAPIGGFDNHEFPSNGDIQHNGINRKSTNPFDFPFDSDVDQSDMFLDMSSLQAALPDALLPAAFGGIAEPWLPQNTVTPYISSAGEGGLSFMAVQTTSSQLQNIQAQEPVASVGGNPFA 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03647 733 PANTHER ARFGAP/RECO-RELATED 1 733 IPR044820 GO:0005096
Trre3g03647 733 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Trre3g03647 733 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Trre3g03647 733 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Trre3g03647 733 MobiDBLite consensus disorder prediction 134 148 - -
Trre3g03647 733 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Trre3g03647 733 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Trre3g03647 733 Pfam Putative GTPase activating protein for Arf 12 122 IPR001164 GO:0005096
Trre3g03647 733 CDD ArfGap_AGFG 15 121 - -
Trre3g03647 733 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Trre3g03647 733 MobiDBLite consensus disorder prediction 286 301 - -
Trre3g03647 733 MobiDBLite consensus disorder prediction 122 164 - -
Trre3g03647 733 SUPERFAMILY ArfGap/RecO-like zinc finger 10 122 IPR037278 -
Trre3g03647 733 MobiDBLite consensus disorder prediction 215 243 - -
Trre3g03647 733 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Trre3g03647 733 MobiDBLite consensus disorder prediction 205 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03647 Trre-Chr3 47135355 47141314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03647 14 88 C2H2 Transcription Factor Family AT4G05330 36.709 1.53e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03647 K15044 - gmx:100788316 966.452